Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KV381_RS24795 Genome accession   NZ_CP079114
Coordinates   5632724..5633782 (+) Length   352 a.a.
NCBI ID   WP_086777120.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5627724..5638782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS24780 (KV381_24780) - 5629086..5630705 (+) 1620 WP_086777117.1 ABC transporter substrate-binding protein -
  KV381_RS24785 (KV381_24785) - 5630834..5631763 (+) 930 WP_086777118.1 ABC transporter permease -
  KV381_RS24790 (KV381_24790) - 5631756..5632712 (+) 957 WP_086777119.1 ABC transporter permease -
  KV381_RS24795 (KV381_24795) amiE 5632724..5633782 (+) 1059 WP_086777120.1 ABC transporter ATP-binding protein Regulator
  KV381_RS24800 (KV381_24800) - 5633775..5634920 (+) 1146 WP_218786319.1 ABC transporter ATP-binding protein -
  KV381_RS24805 (KV381_24805) - 5635104..5636741 (+) 1638 WP_218786322.1 ABC transporter substrate-binding protein -
  KV381_RS24810 (KV381_24810) - 5636861..5637784 (+) 924 WP_030082826.1 ABC transporter permease -
  KV381_RS24815 (KV381_24815) - 5637777..5638754 (+) 978 WP_030082828.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38165.20 Da        Isoelectric Point: 6.9640

>NTDB_id=514209 KV381_RS24795 WP_086777120.1 5632724..5633782(+) (amiE) [Streptomyces sp. WY228]
MTTIDKTAHVPAPRESVSGDGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVSAGETLAVLGESGSGKSVTAQTIMGILDMP
PGKITQGEILFRGQDMLKMSNEERRKIRGRKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKAAKAKSIELMDQVK
IPAAAARISDFPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVGELYSRPAHPYTKGLLDSIPRLDQKGQELYAIKGLPPNLTRIPAGCAFSPRCPKAQDICRT
DIPPLAPVTERDGLELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=514209 KV381_RS24795 WP_086777120.1 5632724..5633782(+) (amiE) [Streptomyces sp. WY228]
GTGACCACCATCGACAAGACGGCTCACGTCCCCGCACCGCGGGAGTCCGTGAGTGGCGACGGTCCACTGCTCGACGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGTGTGGCCAAGGCGGTCAACGGTGTGAACTACACCGTCAGCGCCGGCG
AGACGCTCGCGGTGCTCGGCGAGTCCGGTTCCGGCAAGTCCGTGACCGCGCAGACCATCATGGGCATCCTCGACATGCCG
CCCGGGAAGATCACACAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTGAAGATGTCCAACGAGGAGCGCCGGAAGAT
CCGCGGCCGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTCCTCTCCGTCGGCTACCAGCTGG
GCGAGATGTTCCGGGTGCACCAGGGCCTGTCCAAGAAGGCGGCCAAGGCCAAGTCCATCGAGCTGATGGACCAGGTCAAG
ATCCCGGCGGCGGCGGCCCGTATCTCGGACTTCCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTGGCCGAGCTGCAGCGTGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACGGCCCCGGTCGGCGAGCTGTACAGCCGCCCGGC
CCACCCGTACACCAAGGGTCTGCTGGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCC
TGCCGCCCAACCTCACGCGTATCCCCGCGGGCTGTGCCTTCAGCCCGCGCTGCCCCAAGGCACAGGACATCTGCCGTACG
GACATCCCGCCGCTCGCCCCGGTGACCGAGCGGGACGGTCTCGAGCTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.838

87.784

0.437
  amiE Streptococcus thermophilus LMG 18311

49.191

87.784

0.432
  amiE Streptococcus thermophilus LMD-9

49.191

87.784

0.432
  oppD Streptococcus mutans UA159

47.727

87.5

0.418