Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KV381_RS07495 Genome accession   NZ_CP079114
Coordinates   1755092..1758145 (-) Length   1017 a.a.
NCBI ID   WP_030627513.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750092..1763145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS07475 (KV381_07475) - 1751658..1752641 (-) 984 WP_218784942.1 hypothetical protein -
  KV381_RS07480 (KV381_07480) - 1752646..1753254 (-) 609 WP_030079516.1 papain-like cysteine protease family protein -
  KV381_RS07485 (KV381_07485) - 1753482..1754408 (+) 927 WP_030079518.1 hypothetical protein -
  KV381_RS07490 (KV381_07490) - 1754443..1754871 (-) 429 WP_030079520.1 Rieske (2Fe-2S) protein -
  KV381_RS07495 (KV381_07495) uvrA 1755092..1758145 (-) 3054 WP_030627513.1 excinuclease ABC subunit UvrA Machinery gene
  KV381_RS07500 (KV381_07500) - 1758322..1759011 (+) 690 WP_098026948.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  KV381_RS07505 (KV381_07505) - 1759022..1759678 (+) 657 WP_030079526.1 MBL fold metallo-hydrolase -
  KV381_RS07510 (KV381_07510) - 1759787..1760815 (-) 1029 WP_030079528.1 TerC family protein -
  KV381_RS07515 (KV381_07515) - 1761058..1763040 (-) 1983 WP_218784943.1 TerD family protein -

Sequence

Protein


Download         Length: 1017 a.a.        Molecular weight: 111237.48 Da        Isoelectric Point: 7.7230

>NTDB_id=514172 KV381_RS07495 WP_030627513.1 1755092..1758145(-) (uvrA) [Streptomyces sp. WY228]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECHRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLAEPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGALSEALGFRTDIPWAGLPQRAKKALLFGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHTEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAEVAAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLANKDSITGQYLAGKRSIPTPDIRRPVDPARSLTVHGARENNLQDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLITVL
SGLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGNGGGLVVAEGTPEQVASVPASHTGKFLQSILDADRISEAAVPSGRG
TARKATARTTAPAKKTAAAAKKATGAKANASGAKATTAKAVTGKKAAAKKTTRARKA

Nucleotide


Download         Length: 3054 bp        

>NTDB_id=514172 KV381_RS07495 WP_030627513.1 1755092..1758145(-) (uvrA) [Streptomyces sp. WY228]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGACCTGCCCCGCGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCGTCCCTCGCGTTCGACACGATCTTCGCGGAGGGCCAGCGCCGCT
ACGTGGAGTCGCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAAGGCCTC
TCCCCGGCGGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCCGAGTGCCACCGCCCCATCTCCCGGCAGTCCCCGC
AGGCCATCGTCGACAAGGTCCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTCCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGCTACAGCCGCGCCCGGGTCGACGGCGAGACCATCCAGCT
CGCCGAGCCGCCCACGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACCGTCAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTCGAGACCGCGCTCGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTATTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCGGACGAGGAGAAGTCCCTCGACGAGGGCGCGATCCACCCCTGGTCCCACGGCCACACCAAG
GAGTACTTCGGCCGCCTCATCGGCGCGCTCTCCGAAGCCCTCGGCTTCCGTACGGACATCCCCTGGGCCGGGCTGCCGCA
GCGGGCCAAGAAGGCCCTGCTCTTCGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGCTACGGGCGCGAGCGCG
CCTACACCACCCCCGCCTTCGAGGGCGCGGTGCAGTTCGTCAAGCGGCGGCACACCGAGGCCGAGAGCGACTCCAGCCGG
GAGCGCTTCGAGGGTTACATGCGCGAGGTGCCCTGCCCGACCTGTGAGGGCACCCGGCTCAAGCCGATCGTCCTCGCGGT
GACGGTGATGGAGAAGTCCATCGCCGAGGTCGCCGCCATGTCGATCAGCGAGTGCGCCGAGTTCCTGGGCCGCCTCAAGC
TGAACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAGCGGCTGAAATTCCTCGTCGACGTCGGC
CTGGACTATCTGTCGTTGAACCGCGCGGCCGGCACCCTGTCCGGCGGCGAGGCCCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTGTACGTCCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGA
TCGAGACCCTGGTCCGGCTCCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCG
GACTGGGTCGTGGACATCGGCCCCGGCGCCGGAGAGCACGGCGGCAAGGTCGTCCACTCCGGCTCGCTCAAGGAGCTGCT
GGCCAACAAGGACTCGATCACCGGCCAGTATCTGGCGGGCAAGCGGTCCATCCCGACGCCGGACATCCGCCGCCCGGTCG
ACCCGGCCCGCAGCCTCACCGTGCACGGCGCCCGGGAGAACAACCTCCAGGACATCGACGTCTCCTTCCCGCTCGGCGTC
CTCACCGCCGTCACCGGCGTCTCCGGGTCCGGGAAGTCGACCCTGGTCAACGACATCCTCTACACCCACCTGGCCCGCGA
GCTGAACGGCGCCAAGTCGGTCCCCGGCCGGCACACCCGGGTCGACGGCGACGACCTCGTCGACAAGGTCGTGCACGTCG
ACCAGTCGCCGATCGGCCGGACGCCCCGGTCCAACCCGGCGACGTACACCGGAGTCTTCGACCACGTCCGCAAGCTCTTC
GCCGAGACGATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACCATCAAGATCGAGATGAACTTCCTGCCGGATGTCTACGTCCCGTGCGAGGTCTGCCACGGAG
CGCGCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTACTGGACATGCCGATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTCCCGACGATCGCCCGCCACCTCCGCACGCTCAACGAGGTCGGCCTCGGCTATGTGCG
GCTGGGCCAGTCCGCGCCGACCCTCTCCGGCGGTGAGGCGCAGCGCGTCAAGCTGGCGAGCGAGCTCCAGAAGCGCTCCA
CCGGCCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTGATCACCGTGCTC
TCCGGCCTGGTGGACAAGGGCAACACCGTGATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCCGACTGGGTCGT
CGACATGGGCCCCGAGGGCGGCAACGGCGGTGGCCTGGTGGTCGCCGAGGGAACGCCGGAGCAGGTCGCCTCGGTGCCCG
CCAGCCACACCGGGAAGTTCCTCCAGTCCATCCTGGACGCGGACCGGATCAGCGAGGCGGCGGTGCCCTCCGGACGCGGG
ACGGCCCGCAAGGCGACCGCCCGCACGACCGCCCCGGCGAAGAAGACGGCCGCCGCGGCCAAGAAGGCCACGGGCGCCAA
GGCGAACGCCTCGGGCGCCAAGGCCACCACGGCCAAGGCGGTCACCGGCAAGAAGGCCGCCGCGAAGAAGACCACCCGCG
CTCGCAAGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(629-865)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.481

93.314

0.527
  uvrA Streptococcus pneumoniae TIGR4

56.481

93.314

0.527
  uvrA Streptococcus pneumoniae D39

56.481

93.314

0.527