Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   KV188_RS02500 Genome accession   NZ_CP078508
Coordinates   560748..561380 (+) Length   210 a.a.
NCBI ID   WP_005601574.1    Uniprot ID   B3GXZ4
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555748..566380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV188_RS02485 (KV188_02485) - 555919..556110 (-) 192 WP_231944202.1 hypothetical protein -
  KV188_RS11275 - 556165..556293 (-) 129 WP_005619459.1 hypothetical protein -
  KV188_RS02490 (KV188_02490) purT 556813..557994 (-) 1182 WP_005597983.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KV188_RS02495 (KV188_02495) plsB 558117..560591 (-) 2475 WP_005601572.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  KV188_RS02500 (KV188_02500) dinR/lexA 560748..561380 (+) 633 WP_005601574.1 transcriptional repressor LexA Regulator
  KV188_RS02505 (KV188_02505) mutH 561440..562120 (+) 681 WP_005610420.1 DNA mismatch repair endonuclease MutH -
  KV188_RS02510 (KV188_02510) - 562206..562937 (+) 732 WP_005597990.1 TerC family protein -
  KV188_RS02515 (KV188_02515) nagZ 563052..564089 (+) 1038 WP_039709206.1 beta-N-acetylhexosaminidase -
  KV188_RS02520 (KV188_02520) rlmC 564170..565345 (+) 1176 WP_039709657.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23354.73 Da        Isoelectric Point: 5.8460

>NTDB_id=514028 KV188_RS02500 WP_005601574.1 560748..561380(+) (dinR/lexA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIVVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=514028 KV188_RS02500 WP_005601574.1 560748..561380(+) (dinR/lexA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTTGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACTCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGACGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACGGTAAAGCGCTTGGAGAAAAAAGGCGACCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTGTTGT
TGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAATGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3GXZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.379

98.095

0.367