Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6G47_RS21295 Genome accession   NZ_CP065748
Coordinates   4565521..4567137 (-) Length   538 a.a.
NCBI ID   WP_016454603.1    Uniprot ID   A0AAX3SLT0
Organism   Delftia lacustris strain FDAARGOS_890     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4560521..4572137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G47_RS21280 (I6G47_21280) - 4561483..4561980 (-) 498 WP_016454605.1 hypothetical protein -
  I6G47_RS21285 (I6G47_21285) - 4562037..4563176 (-) 1140 WP_013804750.1 slipin family protein -
  I6G47_RS21290 (I6G47_21290) rtcR 4563874..4565499 (+) 1626 WP_016454604.1 RNA repair transcriptional activator RtcR -
  I6G47_RS21295 (I6G47_21295) rpoN/rpoN1 4565521..4567137 (-) 1617 WP_016454603.1 RNA polymerase factor sigma-54 Machinery gene
  I6G47_RS21300 (I6G47_21300) lptB 4567192..4567989 (-) 798 WP_016450697.1 LPS export ABC transporter ATP-binding protein -
  I6G47_RS21305 (I6G47_21305) lptA 4567986..4568648 (-) 663 WP_016454602.1 lipopolysaccharide transport periplasmic protein LptA -
  I6G47_RS21310 (I6G47_21310) - 4568820..4569470 (-) 651 WP_016450695.1 thiol:disulfide interchange protein DsbA/DsbL -
  I6G47_RS21315 (I6G47_21315) - 4569552..4570241 (-) 690 WP_016454601.1 SPOR domain-containing protein -
  I6G47_RS21320 (I6G47_21320) argS 4570262..4571959 (-) 1698 WP_016450693.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59267.33 Da        Isoelectric Point: 4.5784

>NTDB_id=513918 I6G47_RS21295 WP_016454603.1 4565521..4567137(-) (rpoN/rpoN1) [Delftia lacustris strain FDAARGOS_890]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANDDGDHEAASSAPEPAAPGADAADSFQESR
ADQPSAAVEWEAPSDTSSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGDDDETDATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGDGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREAMVLIARLEPRPGRR
FADVQRQIVVPDVIVRPVRMGAGRMEFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPRKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=513918 I6G47_RS21295 WP_016454603.1 4565521..4567137(-) (rpoN/rpoN1) [Delftia lacustris strain FDAARGOS_890]
TTGAAGCCCGGACTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACCCCGCAACTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGACGACG
GCGACCACGAAGCGGCAAGCAGCGCCCCGGAGCCTGCGGCGCCCGGCGCCGACGCCGCGGACTCCTTCCAGGAAAGCCGT
GCGGACCAGCCATCGGCTGCGGTGGAATGGGAGGCGCCGTCGGACACATCCTCCGGCGATGCCGTCGAGACCTCCGGCAC
GGCCGAATCCCTGAGCTGGGAAGGAGATGGCCAGACCAACTCGGGCAACGACGACCGCGACTGGGGCAGCGATGCGCCTT
CCAGCCGCACGCGCGGCCAGGGTGACGATGACGAGACCGATGCCACCGAGCTGGCACGCAGCGCAGAAAGCCTGACCGAC
CATCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGATCGCGCCGCGCTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGACCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGTTGCAAAGCCTGGAGCCGGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAGCTGCGCGACCAACTGGCCGATGCCGAGCGCGAAGGCGACGGCAGTGCCGAGGACGAAGATCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGTGACCTGCGCAAGCTCGCCA
GCCTGTGCGGCGCGCGCGAGGAGCGGCTGCGCGAGGCGATGGTCCTGATCGCCCGGCTGGAGCCGCGCCCGGGCCGGCGC
TTCGCCGACGTGCAGCGCCAGATCGTCGTGCCCGATGTCATCGTGCGCCCGGTGCGCATGGGTGCGGGACGCATGGAGTT
CAGCGTGCAACTCAACCCCGATGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACCGGG
GCAGCGAAGGCCATGCGGCTCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAGGCGGGCGGCAACGCGTCGAGCACG
GCCGTGCGCGCGCTCATCAAGCAGTTCGTCGCAGCCGAGGACCCCAGGAAGCCGCTGTCGGACAACCAGCTGGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCACGGCGCACCGTGGCCAAGTACCGCGAACTGCTCAAGATCCCCCCGACCACGC
TGCGCAAGGCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.111

100

0.513