Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6G54_RS26890 Genome accession   NZ_CP065743
Coordinates   4994913..4995659 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4989913..5000659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS26875 (I6G54_26875) dnaG 4990682..4992478 (-) 1797 WP_000528216.1 DNA primase -
  I6G54_RS26880 (I6G54_26880) - 4993331..4994143 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  I6G54_RS26885 (I6G54_26885) - 4994173..4994805 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  I6G54_RS26890 (I6G54_26890) recO 4994913..4995659 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  I6G54_RS26895 (I6G54_26895) - 4995693..4995836 (-) 144 WP_002194555.1 YqzL family protein -
  I6G54_RS26900 (I6G54_26900) era 4996013..4996918 (-) 906 WP_001080242.1 GTPase Era -
  I6G54_RS26905 (I6G54_26905) - 4996911..4997309 (-) 399 WP_001086294.1 cytidine deaminase -
  I6G54_RS26910 (I6G54_26910) - 4997409..4997762 (-) 354 WP_000715478.1 diacylglycerol kinase family protein -
  I6G54_RS26915 (I6G54_26915) ybeY 4997759..4998229 (-) 471 WP_002194557.1 rRNA maturation RNase YbeY -
  I6G54_RS26920 (I6G54_26920) - 4998226..5000370 (-) 2145 WP_002194559.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=513851 I6G54_RS26890 WP_000487010.1 4994913..4995659(-) (recO) [Bacillus tropicus strain FDAARGOS_897]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=513851 I6G54_RS26890 WP_000487010.1 4994913..4995659(-) (recO) [Bacillus tropicus strain FDAARGOS_897]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAGTTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552