Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I6G54_RS15860 Genome accession   NZ_CP065743
Coordinates   2843875..2844162 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2838875..2849162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS15840 (I6G54_15840) - 2840061..2840258 (+) 198 WP_001979610.1 DUF4083 domain-containing protein -
  I6G54_RS15845 (I6G54_15845) - 2840282..2840743 (+) 462 WP_000024988.1 NUDIX hydrolase -
  I6G54_RS15850 (I6G54_15850) nadE 2840789..2841607 (-) 819 WP_000174890.1 ammonia-dependent NAD(+) synthetase -
  I6G54_RS15855 (I6G54_15855) - 2841879..2843759 (+) 1881 WP_001973823.1 ABC transporter permease -
  I6G54_RS15860 (I6G54_15860) abrB 2843875..2844162 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I6G54_RS15865 (I6G54_15865) - 2844436..2845386 (+) 951 WP_001973839.1 serine protease -
  I6G54_RS15870 (I6G54_15870) galT 2845584..2847074 (+) 1491 WP_001973841.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  I6G54_RS15875 (I6G54_15875) - 2847185..2847493 (-) 309 WP_001973844.1 ArsR/SmtB family transcription factor -
  I6G54_RS15880 (I6G54_15880) - 2847602..2848537 (+) 936 WP_001973847.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=513840 I6G54_RS15860 WP_000648331.1 2843875..2844162(+) (abrB) [Bacillus tropicus strain FDAARGOS_897]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=513840 I6G54_RS15860 WP_000648331.1 2843875..2844162(+) (abrB) [Bacillus tropicus strain FDAARGOS_897]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516