Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6G54_RS13790 Genome accession   NZ_CP065743
Coordinates   2423077..2423679 (-) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2418077..2428679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS13770 (I6G54_13770) dnaD 2418390..2419097 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  I6G54_RS13775 (I6G54_13775) nth 2419113..2419760 (+) 648 WP_000933027.1 endonuclease III -
  I6G54_RS13780 (I6G54_13780) - 2419764..2420282 (+) 519 WP_002194136.1 YpoC family protein -
  I6G54_RS13785 (I6G54_13785) - 2420306..2423011 (-) 2706 WP_002194137.1 PBP1A family penicillin-binding protein -
  I6G54_RS13790 (I6G54_13790) recU 2423077..2423679 (-) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  I6G54_RS13795 (I6G54_13795) - 2423783..2424808 (+) 1026 WP_033691104.1 DUF2515 domain-containing protein -
  I6G54_RS29250 - 2425068..2425244 (-) 177 WP_002194139.1 hypothetical protein -
  I6G54_RS13800 (I6G54_13800) - 2425330..2425572 (+) 243 WP_002194141.1 hypothetical protein -
  I6G54_RS13805 (I6G54_13805) - 2425588..2425932 (+) 345 WP_000786940.1 YppE family protein -
  I6G54_RS13810 (I6G54_13810) - 2425959..2426150 (-) 192 WP_000242653.1 YppF family protein -
  I6G54_RS13815 (I6G54_13815) - 2426328..2426837 (+) 510 WP_002194143.1 YppG family protein -
  I6G54_RS13820 (I6G54_13820) - 2426994..2427422 (+) 429 WP_000546268.1 CotD family spore coat protein -
  I6G54_RS13825 (I6G54_13825) - 2427479..2428033 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  I6G54_RS13830 (I6G54_13830) gpsB 2428131..2428469 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=513838 I6G54_RS13790 WP_000155593.1 2423077..2423679(-) (recU) [Bacillus tropicus strain FDAARGOS_897]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=513838 I6G54_RS13790 WP_000155593.1 2423077..2423679(-) (recU) [Bacillus tropicus strain FDAARGOS_897]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625