Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I6G54_RS12465 Genome accession   NZ_CP065743
Coordinates   2179034..2179357 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2174034..2184357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS12440 (I6G54_12440) - 2174104..2175390 (+) 1287 WP_001973049.1 D-alanyl-D-alanine carboxypeptidase family protein -
  I6G54_RS12445 (I6G54_12445) sipW 2175583..2176152 (+) 570 WP_001973051.1 signal peptidase I SipW -
  I6G54_RS12450 (I6G54_12450) - 2176213..2176800 (+) 588 WP_000172849.1 CalY family protein -
  I6G54_RS12455 (I6G54_12455) - 2176962..2177933 (+) 972 WP_001973054.1 DUF4047 domain-containing protein -
  I6G54_RS12460 (I6G54_12460) calY 2178364..2178957 (+) 594 WP_033691696.1 biofilm matrix protein CalY -
  I6G54_RS12465 (I6G54_12465) sinR 2179034..2179357 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  I6G54_RS12470 (I6G54_12470) - 2179437..2179571 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  I6G54_RS12475 (I6G54_12475) inhA1 2179915..2182302 (+) 2388 WP_001973063.1 M6 family metalloprotease immune inhibitor InhA1 -
  I6G54_RS12480 (I6G54_12480) - 2182471..2183838 (+) 1368 WP_001973064.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=513836 I6G54_RS12465 WP_000578880.1 2179034..2179357(-) (sinR) [Bacillus tropicus strain FDAARGOS_897]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=513836 I6G54_RS12465 WP_000578880.1 2179034..2179357(-) (sinR) [Bacillus tropicus strain FDAARGOS_897]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692