Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   N564_RS06930 Genome accession   NC_022352
Coordinates   1323528..1324496 (+) Length   322 a.a.
NCBI ID   WP_002858230.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 00-2426     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318528..1329496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N564_RS06905 (N564_01343) cdsA 1319438..1320163 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  N564_RS06910 (N564_01344) - 1320172..1320510 (-) 339 WP_002852397.1 hypothetical protein -
  N564_RS06915 (N564_01345) - 1320512..1321819 (-) 1308 WP_002858307.1 NFACT family protein -
  N564_RS06920 (N564_01346) mobA 1321881..1322456 (+) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  N564_RS06925 (N564_01347) pldA 1322453..1323442 (+) 990 WP_002858083.1 phospholipase A -
  N564_RS06930 (N564_01348) ceuB 1323528..1324496 (+) 969 WP_002858230.1 ABC transporter permease Machinery gene
  N564_RS06935 (N564_01349) ceuC 1324489..1325427 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  N564_RS06940 (N564_01350) ceuD 1325424..1326179 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  N564_RS06945 (N564_01351) ceuB 1326192..1327184 (+) 993 WP_002856494.1 enterochelin ABC transporter substrate-binding protein CeuB -
  N564_RS06955 (N564_01353) - 1327410..1327964 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35451.37 Da        Isoelectric Point: 9.6678

>NTDB_id=51382 N564_RS06930 WP_002858230.1 1323528..1324496(+) (ceuB) [Campylobacter jejuni subsp. jejuni 00-2426]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVIQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=51382 N564_RS06930 WP_002858230.1 1323528..1324496(+) (ceuB) [Campylobacter jejuni subsp. jejuni 00-2426]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATACAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988

Multiple sequence alignment