Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   I6G54_RS05870 Genome accession   NZ_CP065743
Coordinates   892577..893704 (+) Length   375 a.a.
NCBI ID   WP_000470750.1    Uniprot ID   A0A2C3GXQ0
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 887577..898704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS05840 (I6G54_05840) spoIIIJ 887622..888389 (-) 768 WP_000727747.1 YidC family membrane integrase SpoIIIJ -
  I6G54_RS05845 (I6G54_05845) rnpA 888442..888789 (-) 348 WP_000726630.1 ribonuclease P protein component -
  I6G54_RS05850 (I6G54_05850) rpmH 888866..889000 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  I6G54_RS05855 (I6G54_05855) dnaA 889566..890906 (+) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  I6G54_RS05860 (I6G54_05860) dnaN 891085..892224 (+) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  I6G54_RS05865 (I6G54_05865) yaaA 892352..892564 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  I6G54_RS05870 (I6G54_05870) recF 892577..893704 (+) 1128 WP_000470750.1 DNA replication/repair protein RecF Machinery gene
  I6G54_RS05875 (I6G54_05875) gyrB 893743..895665 (+) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  I6G54_RS05880 (I6G54_05880) gyrA 895754..898225 (+) 2472 WP_001282851.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.66 Da        Isoelectric Point: 6.7809

>NTDB_id=513818 I6G54_RS05870 WP_000470750.1 892577..893704(+) (recF) [Bacillus tropicus strain FDAARGOS_897]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=513818 I6G54_RS05870 WP_000470750.1 892577..893704(+) (recF) [Bacillus tropicus strain FDAARGOS_897]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCTAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTACGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCAAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTGGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTAGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3GXQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651