Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I6G77_RS26375 Genome accession   NZ_CP065739
Coordinates   5125479..5125802 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus tropicus strain FDAARGOS_920     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 5120479..5130802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G77_RS26350 (I6G77_26350) - 5120714..5122000 (+) 1287 WP_001973049.1 D-alanyl-D-alanine carboxypeptidase family protein -
  I6G77_RS26355 (I6G77_26355) sipW 5122193..5122762 (+) 570 WP_001973051.1 signal peptidase I SipW -
  I6G77_RS26360 (I6G77_26360) - 5122823..5123410 (+) 588 WP_000172849.1 CalY family protein -
  I6G77_RS26365 (I6G77_26365) - 5123572..5124378 (+) 807 WP_197964259.1 DUF4047 domain-containing protein -
  I6G77_RS26370 (I6G77_26370) calY 5124809..5125402 (+) 594 WP_033691696.1 biofilm matrix protein CalY -
  I6G77_RS26375 (I6G77_26375) sinR 5125479..5125802 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  I6G77_RS26380 (I6G77_26380) - 5125882..5126016 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  I6G77_RS26385 (I6G77_26385) inhA1 5126360..5128747 (+) 2388 WP_001035938.1 M6 family metalloprotease immune inhibitor InhA1 -
  I6G77_RS26390 (I6G77_26390) - 5128920..5130287 (+) 1368 WP_001973064.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=513806 I6G77_RS26375 WP_000578880.1 5125479..5125802(-) (sinR) [Bacillus tropicus strain FDAARGOS_920]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=513806 I6G77_RS26375 WP_000578880.1 5125479..5125802(-) (sinR) [Bacillus tropicus strain FDAARGOS_920]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692