Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I6G77_RS20040 Genome accession   NZ_CP065739
Coordinates   3883987..3884271 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain FDAARGOS_920     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3878987..3889271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G77_RS20005 (I6G77_20005) tmk 3878988..3879614 (+) 627 WP_001980834.1 dTMP kinase -
  I6G77_RS20010 (I6G77_20010) holB 3879650..3880633 (+) 984 WP_000978580.1 DNA polymerase III subunit delta' -
  I6G77_RS20015 (I6G77_20015) - 3880639..3881466 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  I6G77_RS20020 (I6G77_20020) yabA 3881481..3881831 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  I6G77_RS20025 (I6G77_20025) - 3882105..3882845 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I6G77_RS20030 (I6G77_20030) - 3882832..3883122 (+) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  I6G77_RS20035 (I6G77_20035) rsmI 3883091..3883966 (+) 876 WP_001980843.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I6G77_RS20040 (I6G77_20040) abrB 3883987..3884271 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I6G77_RS20045 (I6G77_20045) metG 3884789..3886771 (+) 1983 WP_033692422.1 methionine--tRNA ligase -
  I6G77_RS20050 (I6G77_20050) - 3886938..3887705 (+) 768 WP_000895835.1 TatD family hydrolase -
  I6G77_RS20055 (I6G77_20055) rnmV 3887923..3888480 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=513790 I6G77_RS20040 WP_000843036.1 3883987..3884271(-) (abrB) [Bacillus tropicus strain FDAARGOS_920]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=513790 I6G77_RS20040 WP_000843036.1 3883987..3884271(-) (abrB) [Bacillus tropicus strain FDAARGOS_920]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851