Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KWY95_RS04610 Genome accession   NZ_CP078117
Coordinates   877120..880053 (-) Length   977 a.a.
NCBI ID   WP_003704778.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872120..885053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS04585 (KWY95_04585) - 872402..874036 (+) 1635 WP_003689652.1 CTP synthase -
  KWY95_RS04590 (KWY95_04590) - 874178..874831 (+) 654 WP_017147275.1 IS1595 family transposase -
  KWY95_RS04595 (KWY95_04595) - 874828..875016 (-) 189 WP_014580099.1 transposase -
  KWY95_RS04600 (KWY95_04600) - 875324..876457 (-) 1134 WP_003689650.1 DNA cytosine methyltransferase -
  KWY95_RS04605 (KWY95_04605) - 876461..877102 (-) 642 WP_003689649.1 Eco29kI family restriction endonuclease -
  KWY95_RS04610 (KWY95_04610) uvrA 877120..880053 (-) 2934 WP_003704778.1 excinuclease ABC subunit UvrA Machinery gene
  KWY95_RS04615 (KWY95_04615) - 880123..880902 (+) 780 WP_003690682.1 phosphatidylserine decarboxylase -
  KWY95_RS04620 (KWY95_04620) znuD 881442..883718 (-) 2277 WP_014580101.1 TonB-dependent zinc receptor ZnuD -
  KWY95_RS04625 (KWY95_04625) - 884129..884719 (+) 591 WP_003689643.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 977 a.a.        Molecular weight: 108761.94 Da        Isoelectric Point: 7.3669

>NTDB_id=513746 KWY95_RS04610 WP_003704778.1 877120..880053(-) (uvrA) [Neisseria gonorrhoeae strain SK92679]
MPSERGFRRHPRKCYNIGFPLFFQAASIMCNHHPRHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLA
FDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP
EHNLSLSSQTVSQMVDAVLKLPEDTRVMILGPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNID
VVIDRVKVKADIKQRLAESFETALRHGNERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGL
GNTNFFDPEKVVAHPELSLATGAIDGWDKRNQFYFQMIQSLAHHYKFDVNVAWETLPEKVKKVVLHGSGKEVIDFTYLSE
RGTTFNRSHAFEGIIPNLERRYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHRFF
ETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD
NDRLLATLKRLRDLGNSVIVVEHDEDAIREADFVVDMGPGAGEHGGNVLIADTPENVAKCEKSVTGQYLGGKKSIAVPSE
RTPVNPGRMLVLKGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDK
VINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCE
VCHGKRYNRETLEIQYKGKNISQVLDMTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALEL
SKRDTGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGKVIAKGSPEEV
AKVKGSYTGKYLKVVLK

Nucleotide


Download         Length: 2934 bp        

>NTDB_id=513746 KWY95_RS04610 WP_003704778.1 877120..880053(-) (uvrA) [Neisseria gonorrhoeae strain SK92679]
ATGCCGTCTGAACGCGGCTTCAGACGGCATCCGAGAAAGTGCTACAATATCGGTTTTCCTTTATTTTTTCAGGCGGCATC
CATTATGTGCAACCATCATCCCCGACATTCGCACGACAACGACACCATCCGCATTCGCGGCGCGCGCACGCATAATTTGA
AAAACATCGATTTGGACATTCCCCGCCACAAGCTCGTGGTGGTAACAGGATTGTCAGGCAGCGGCAAATCATCGCTGGCG
TTTGATACTTTATATGCCGAAGGGCAGCGGCGTTATGTCGAGAGCCTGTCTGCCTATGCGCGGCAGTTTTTGCAGATGAT
GGACAAACCCGATGTCGATTTGATTGAAGGCCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGC
GTTCCACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTATACGCCCGTGTCGGCACGCCGTATTGCCCC
GAACACAATTTGTCGCTGTCGAGCCAAACCGTGTCGCAGATGGTTGATGCCGTGTTGAAGCTGCCGGAAGATACGCGCGT
GATGATTCTGGGGCCGGCGGTGCGCGAGCGTAAAGGCGAATTTGTCGATTTCTTTGCCGACTTGCAGGCGCAAGGCTTTG
CCCGTGTGCGCGTGGACGGCGAAGTCTATCAGCTTGACGAAGTACCGAAGCTGGAAAAAAACATCAAACACAATATCGAC
GTCGTCATCGACCGCGTGAAAGTGAAAGCCGACATCAAACAACGACTGGCGGAAAGTTTTGAAACCGCGCTGCGCCACGG
CAACGAGCGCGCGCTGGCGATGGAAATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTTGCCTGCCCCGTGTGTT
CGTACAGCCTGCCCGAATTGGAACCGCGCCTCTTTTCGTTCAACAACCCGATGGGTTCCTGCCCGACTTGCGACGGCTTG
GGCAACACCAATTTCTTCGACCCCGAAAAAGTAGTCGCCCATCCCGAATTGTCGCTGGCAACCGGCGCGATTGACGGTTG
GGACAAACGCAACCAATTCTATTTCCAAATGATTCAATCGCTGGCGCATCATTATAAATTTGATGTCAACGTCGCTTGGG
AAACTTTGCCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAAGAAGTCATTGATTTCACCTACCTGTCCGAA
CGCGGCACCACCTTCAACCGCAGCCACGCCTTCGAGGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAG
CGAAACCGTGCGCGAAAAACTGCGCGAGTACCAAAATCACCGTGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAG
AAGCACGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCGATTCTTC
GAAACGCTGGATTTGGACGGCAACAAAAAACAGATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTCGGCTTCTT
GATTAACGTCGGGCTGGATTACCTGAATTTAAGCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCC
TCGCCAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAACCCTCCATCGGCCTGCACCAGCGCGAC
AACGACCGCCTGCTCGCCACCCTCAAACGCCTGCGCGATTTGGGCAACAGCGTAATTGTGGTCGAACACGACGAAGACGC
CATCCGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTACTGATTGCCGACACAC
CCGAAAATGTCGCCAAATGCGAAAAATCCGTTACCGGACAATACCTCGGCGGTAAAAAATCCATTGCCGTGCCGTCTGAA
CGCACGCCCGTCAATCCCGGCCGAATGCTCGTCCTCAAAGGCGCGCGCGGCAACAACCTCAAAAACGTAACCCTCGAGTT
GCCGCTTGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAA
TCACTGCCCGCGAACTCAACCGCGCCCAAGAAGAGCCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAA
GTCATCAACGTCGACCAATCCCCCATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTTACCCCCAT
CCGCGAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCG
GCCGCTGCGAAGCCTGCCAAGGCGACGGCGTAATCAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAA
GTCTGCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACAT
GACGGTCGAAGAAGCCCGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGTC
TCGGCTACATCCGCCTCGGCCAATCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTC
TCCAAACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCT
GCTGGAAGTCATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATCGAGCATAATCTGGATGTAATTAAAACCG
CGGATTGGATTGTGGACTTAGGGCCGGAAGGCGGCGATGGTGGGGGTAAGGTTATCGCGAAAGGTAGCCCTGAGGAAGTG
GCGAAGGTTAAGGGGAGTTATACCGGGAAGTATTTGAAAGTGGTTTTGAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(169-273)

UvrA DNA-binding domain (UvrA_DNA-bind)

(327-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.338

95.906

0.569
  uvrA Streptococcus pneumoniae TIGR4

59.338

95.906

0.569
  uvrA Streptococcus pneumoniae D39

59.338

95.906

0.569