Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KWY95_RS02900 Genome accession   NZ_CP078117
Coordinates   540484..541452 (-) Length   322 a.a.
NCBI ID   WP_003699352.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SK92679     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535484..546452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY95_RS02875 (KWY95_02875) - 536026..537333 (-) 1308 WP_012504094.1 YadA-like family protein -
  KWY95_RS02880 (KWY95_02880) - 537319..537972 (+) 654 WP_048596920.1 IS1595 family transposase -
  KWY95_RS02885 (KWY95_02885) - 538007..538765 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  KWY95_RS02890 (KWY95_02890) - 538849..539475 (-) 627 WP_003690385.1 FmdE family protein -
  KWY95_RS02895 (KWY95_02895) - 539520..540494 (-) 975 WP_003690387.1 iron chelate uptake ABC transporter family permease subunit -
  KWY95_RS02900 (KWY95_02900) ceuB 540484..541452 (-) 969 WP_003699352.1 ABC transporter permease Machinery gene
  KWY95_RS02905 (KWY95_02905) - 541471..541662 (-) 192 WP_162098494.1 hypothetical protein -
  KWY95_RS02910 (KWY95_02910) - 541680..542645 (-) 966 WP_003690393.1 siderophore ABC transporter substrate-binding protein -
  KWY95_RS02915 (KWY95_02915) fetA 542951..545113 (-) 2163 WP_003700794.1 TonB-dependent siderophore receptor FetA/FrpB -
  KWY95_RS02920 (KWY95_02920) - 545622..545912 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34400.71 Da        Isoelectric Point: 10.5988

>NTDB_id=513733 KWY95_RS02900 WP_003699352.1 540484..541452(-) (ceuB) [Neisseria gonorrhoeae strain SK92679]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=513733 KWY95_RS02900 WP_003699352.1 540484..541452(-) (ceuB) [Neisseria gonorrhoeae strain SK92679]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.196

93.478

0.385