Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   I6G26_RS11655 Genome accession   NZ_CP065728
Coordinates   2154788..2155615 (-) Length   275 a.a.
NCBI ID   WP_406946792.1    Uniprot ID   -
Organism   Moraxella nonliquefaciens strain FDAARGOS_869     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2149788..2160615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G26_RS10540 (I6G26_10545) - 2150290..2150511 (-) 222 WP_062500321.1 YdcH family protein -
  I6G26_RS10545 (I6G26_10550) ahpF 2150793..2152349 (+) 1557 WP_067007656.1 alkyl hydroperoxide reductase subunit F -
  I6G26_RS10550 (I6G26_10555) - 2152451..2152978 (-) 528 WP_066893986.1 cytochrome b -
  I6G26_RS10555 (I6G26_10560) - 2153008..2153508 (-) 501 WP_066893840.1 hypothetical protein -
  I6G26_RS10560 (I6G26_10565) - 2153639..2154757 (-) 1119 WP_082995425.1 chemotaxis protein CheB -
  I6G26_RS11655 chpA 2154788..2155615 (-) 828 WP_406946792.1 response regulator Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 30754.78 Da        Isoelectric Point: 6.3556

>NTDB_id=513622 I6G26_RS11655 WP_406946792.1 2154788..2155615(-) (chpA) [Moraxella nonliquefaciens strain FDAARGOS_869]
MSDVLVVRAADRQYAIPLVQIESVVQMNATELLAYHQSGKNTIKIDNKNYRLRYLNEILAGNYFNEIVSGTTLPVIIIKT
QTGQALALQVDEIVGSRIEIVVKPLGRQLSNLSGISAATIMGDGSVMLILDLLALMRTAQAKREVKEVEPTASRRHLIMV
VDDSVTVRKVTSRFLERQGFEVIVAKDGVDAIEILQDNMPDLMLLDIEMPRMDGFEVATQVRHSSRLSHLPIIMITSRTG
EKHRDRAFEIGVNDYMGKPFQEMELLGRIGNLLNI

Nucleotide


Download         Length: 828 bp        

>NTDB_id=513622 I6G26_RS11655 WP_406946792.1 2154788..2155615(-) (chpA) [Moraxella nonliquefaciens strain FDAARGOS_869]
ATGTCAGATGTGCTTGTTGTACGAGCGGCTGACCGCCAGTATGCCATTCCGTTGGTGCAGATTGAGAGTGTGGTACAGAT
GAATGCCACCGAACTACTGGCTTATCATCAGTCGGGCAAAAACACCATCAAGATTGACAACAAAAACTATCGCTTGCGTT
ATCTTAATGAAATTTTGGCGGGTAATTATTTTAATGAGATTGTCTCAGGTACTACCTTGCCTGTCATCATCATCAAAACA
CAAACAGGACAAGCTCTTGCCTTACAAGTGGATGAAATTGTAGGCTCTCGTATTGAGATTGTGGTAAAACCATTGGGTCG
CCAACTGTCCAACTTATCGGGCATTTCAGCGGCAACCATCATGGGCGATGGTTCGGTCATGCTCATCCTTGACCTGTTAG
CACTCATGCGTACCGCTCAGGCAAAACGAGAGGTCAAAGAGGTAGAACCTACTGCCAGTCGTCGTCATCTTATCATGGTG
GTAGATGACTCGGTAACAGTACGTAAGGTAACCTCTCGTTTCCTAGAACGTCAAGGCTTTGAGGTAATTGTTGCCAAAGA
CGGTGTTGATGCCATTGAGATTTTGCAGGACAACATGCCTGATTTGATGTTGCTTGACATTGAGATGCCACGCATGGATG
GATTTGAGGTTGCCACACAGGTACGTCATAGTTCTCGTTTGAGCCATTTGCCAATCATTATGATCACATCAAGAACAGGC
GAGAAACACCGAGATCGTGCCTTTGAGATTGGTGTTAATGACTACATGGGTAAGCCATTCCAAGAGATGGAACTGCTGGG
ACGTATTGGTAATTTGCTTAACATTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(158-269)

CheW-like domain (CheW)

(4-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

54.093

100

0.553