Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6G26_RS05000 Genome accession   NZ_CP065728
Coordinates   940494..941432 (+) Length   312 a.a.
NCBI ID   WP_066886499.1    Uniprot ID   -
Organism   Moraxella nonliquefaciens strain FDAARGOS_869     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935494..946432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G26_RS04980 (I6G26_04980) - 936134..936331 (+) 198 WP_065256459.1 hypothetical protein -
  I6G26_RS04985 (I6G26_04985) - 936395..936775 (+) 381 WP_066886505.1 Rid family detoxifying hydrolase -
  I6G26_RS04990 (I6G26_04990) - 936963..939239 (+) 2277 WP_145916072.1 primosomal protein N' -
  I6G26_RS04995 (I6G26_04995) - 939292..940317 (-) 1026 WP_067008452.1 ABC transporter substrate-binding protein -
  I6G26_RS05000 (I6G26_05000) pilA 940494..941432 (+) 939 WP_066886499.1 signal recognition particle-docking protein FtsY Machinery gene
  I6G26_RS05005 (I6G26_05005) - 941489..942016 (+) 528 WP_067008455.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I6G26_RS05010 (I6G26_05010) - 942004..942639 (-) 636 WP_067008458.1 DUF1294 domain-containing protein -
  I6G26_RS05015 (I6G26_05015) msrAB 942779..944464 (-) 1686 WP_067008461.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  I6G26_RS05020 (I6G26_05020) ahcY 944558..945931 (-) 1374 WP_067008464.1 adenosylhomocysteinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33399.36 Da        Isoelectric Point: 4.8871

>NTDB_id=513613 I6G26_RS05000 WP_066886499.1 940494..941432(+) (pilA) [Moraxella nonliquefaciens strain FDAARGOS_869]
MSENKSGFFARMKAGLSKSSKNLSEGLMNVLVGGKEIDDELLEEVEDQLLTADIGVEATNRIITSLTEQTARGDLIYSHS
LYKALKKELVNILEPKVAPLVIDTTKKPFVILMVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGE
RNGISVVAQGQGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTYLMNELEKVIRVMKKADESAPHECMIVLDAGTGQ
NAISQINLFGEVAPLSGVTITKLDGTAKGGVVFNVAQTTDVPIRFIGVGERIDDLQPFDSKEFVDALIGEEK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=513613 I6G26_RS05000 WP_066886499.1 940494..941432(+) (pilA) [Moraxella nonliquefaciens strain FDAARGOS_869]
ATGAGTGAGAATAAAAGCGGATTTTTTGCCCGCATGAAAGCAGGGTTGTCCAAATCCAGTAAGAATTTATCAGAAGGTCT
GATGAATGTATTGGTTGGCGGTAAAGAGATTGATGATGAACTTTTAGAGGAGGTTGAAGACCAGCTTCTTACGGCAGATA
TTGGTGTAGAAGCGACCAACAGGATTATCACAAGCCTTACTGAACAGACAGCACGGGGTGATTTGATTTATTCGCATTCG
TTATATAAAGCCCTAAAAAAGGAATTGGTGAACATCTTAGAGCCCAAGGTTGCACCACTTGTCATTGACACAACCAAAAA
GCCTTTTGTCATCTTAATGGTTGGGGTTAATGGCGTGGGTAAAACGACAACCATCGGTAAACTTGCCAAACGCTTACAAG
GTGAGGGCAAATCGGTCATGTTGGCGGCAGGTGATACTTTTCGTGCAGCGGCCACCGAGCAACTGCAAGTTTGGGGTGAA
CGAAACGGCATTTCTGTGGTGGCACAAGGACAAGGTTCAGACAGTGCATCGGTGATTTTTGATGCCATGCAGTCTGCCAA
AGCCAAAGGCATTGATGTGCTGATTGCTGACACCGCAGGGCGACTACAAAACAAGACTTATCTTATGAATGAGCTTGAAA
AAGTCATTCGTGTCATGAAAAAAGCAGATGAGAGTGCTCCGCATGAGTGCATGATTGTGCTAGATGCTGGCACAGGTCAA
AATGCCATCAGTCAGATTAATCTGTTTGGCGAGGTTGCTCCATTGTCAGGTGTTACCATCACCAAGCTAGATGGCACAGC
AAAAGGGGGTGTGGTTTTTAATGTCGCCCAAACCACCGACGTGCCCATTCGTTTTATTGGGGTGGGTGAACGTATTGATG
ATTTACAGCCCTTTGATTCAAAAGAATTTGTAGATGCACTCATCGGCGAGGAAAAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(23-89)

SRP54-type protein, GTPase domain (SRP54)

(108-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.961

98.077

0.51