Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   I6G28_RS04995 Genome accession   NZ_CP065726
Coordinates   1014422..1016170 (-) Length   582 a.a.
NCBI ID   WP_111726939.1    Uniprot ID   A0A7T3BLY9
Organism   Neisseria cinerea strain FDAARGOS_871     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1009422..1021170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G28_RS04975 (I6G28_04975) - 1009617..1010051 (+) 435 WP_111726945.1 hypothetical protein -
  I6G28_RS04980 (I6G28_04980) - 1010109..1010378 (-) 270 WP_003677477.1 HU family DNA-binding protein -
  I6G28_RS04985 (I6G28_04985) lon 1010560..1013022 (-) 2463 WP_111726943.1 endopeptidase La -
  I6G28_RS04990 (I6G28_04990) - 1013239..1014342 (+) 1104 WP_111726941.1 methyltransferase -
  I6G28_RS04995 (I6G28_04995) recD 1014422..1016170 (-) 1749 WP_111726939.1 exodeoxyribonuclease V subunit alpha Machinery gene
  I6G28_RS05000 (I6G28_05000) lolD 1016236..1016931 (-) 696 WP_111726937.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  I6G28_RS05005 (I6G28_05005) - 1016924..1018171 (-) 1248 WP_108043711.1 lipoprotein-releasing ABC transporter permease subunit -
  I6G28_RS05010 (I6G28_05010) - 1018363..1018641 (+) 279 WP_111726935.1 hypothetical protein -
  I6G28_RS05015 (I6G28_05015) recR 1018699..1019316 (-) 618 WP_039854554.1 recombination mediator RecR -
  I6G28_RS05020 (I6G28_05020) - 1019385..1020923 (-) 1539 WP_111726933.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63778.80 Da        Isoelectric Point: 6.6912

>NTDB_id=513584 I6G28_RS04995 WP_111726939.1 1014422..1016170(-) (recD) [Neisseria cinerea strain FDAARGOS_871]
MERQTDEFALAAAQAAIRFLEHYTDSGAEALSSYIERLFQALQNGHSFIRLKKGEASFLSTLKPVVGESASPLILEGEKL
FLGRMWQLEYDLATEIKRLAAAGTSAPDVAGARQNLAKWFQGVGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICSGDGALPHIALAAPTGKAAAHMARALHRAINSFDAPDNVRRHLLKLEGQTVHRLLKLRPPKMQPAFNPVYPLPFDVL
IIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGVGAVLSVLSQKTLLGGEIYNKLVEYLPEHGFPLCRDVPVLA
QNTARLSFSHRFGDNSGIGCLSRSVVSGDEAQAWALFSRFDKELEHSECRLNAQVERLYRTHKGYWQAVDEGNIESAYAG
ISDAVVLAAWRQDAENFNEAYCNYVRRKRNIPEHQVYFAGEPIMIRQNDYALGLFNGDVGLIMDDAQRPGSLSAYFPDTD
GFKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSNEEDDALSGLSRELLYTAITRAKEKFVFFGGEETFRQA
AATVKVRQTALGNMLKRVFSQG

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=513584 I6G28_RS04995 WP_111726939.1 1014422..1016170(-) (recD) [Neisseria cinerea strain FDAARGOS_871]
ATGGAACGGCAGACAGATGAATTTGCCCTGGCGGCTGCACAGGCGGCAATCCGTTTTTTGGAACACTATACCGACTCCGG
TGCTGAAGCCCTTTCTTCCTATATCGAACGGCTGTTTCAAGCATTGCAGAACGGTCATTCGTTTATCCGCTTGAAAAAAG
GGGAGGCGTCCTTCCTTTCGACACTCAAGCCCGTAGTCGGGGAATCTGCCTCCCCTCTGATTTTGGAAGGGGAAAAACTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTACCGAAATAAAACGTTTGGCGGCGGCCGGCACGTCCGCCCC
CGACGTGGCAGGTGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGAGTGGGAAGCGAAGGACAGCGCGATGCGGCTGCTC
TAGCATTGCTGCAGTCTTTTATGGTGATTACCGGCGGCCCCGGTACGGGTAAGACGACGACGGTTGCCAAACTGTTGGCA
CTGATTTGCAGCGGGGACGGAGCCCTTCCCCATATCGCGCTTGCCGCTCCTACGGGTAAGGCTGCCGCGCATATGGCGCG
TGCGCTGCACCGTGCAATCAACAGTTTTGACGCTCCGGACAACGTCCGCCGCCATCTGCTTAAATTGGAAGGGCAAACCG
TCCACCGCCTGCTGAAGCTGCGCCCGCCTAAAATGCAGCCTGCATTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
ATTATCGATGAAGCTTCGATGCTGGATACGGTATTGATGCTTCAGCTTTTAAAGGCCGTTAAAACAGGGGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTTCCGTCTGTCGGGGTCGGTGCCGTACTCTCCGTCCTGTCTCAAAAAACGCTCCTCG
GCGGAGAAATATATAATAAGCTGGTTGAGTACCTGCCCGAACACGGTTTTCCCTTATGCAGAGATGTACCCGTCTTGGCA
CAAAATACCGCCCGTCTTTCCTTCAGCCACCGATTTGGCGACAACAGCGGCATCGGCTGCCTTTCCCGCTCGGTCGTATC
GGGCGATGAGGCGCAGGCATGGGCTTTGTTCTCCCGGTTCGATAAAGAGCTGGAACATTCGGAATGCCGTCTGAACGCTC
AGGTCGAAAGGTTGTACCGGACTCACAAAGGCTATTGGCAGGCGGTAGACGAAGGCAACATCGAATCCGCCTATGCGGGC
ATCTCGGATGCGGTGGTTCTGGCCGCATGGCGCCAAGATGCGGAAAACTTCAACGAAGCCTACTGCAATTATGTGCGCCG
TAAAAGGAACATACCCGAACATCAGGTCTATTTCGCCGGAGAGCCGATTATGATCAGGCAAAACGACTACGCACTCGGGC
TGTTCAACGGAGACGTCGGGCTGATTATGGATGATGCCCAAAGACCGGGCAGCCTGTCCGCCTATTTTCCCGATACGGAC
GGGTTTAAAAAGGTTGCAGTCAGCTGCCTTCCGGATTTTGAACCCGCTTTCGCCATGACCGTCCATAAAAGCCAAGGTTC
GGAGTATCGGGAAGTCTGGCTGCTGCCGCCATCTGCCGCACCTTCGAATGAAGAGGACGATGCGCTTTCCGGCTTGAGCA
GGGAGCTGCTTTACACCGCCATTACCAGGGCAAAGGAAAAATTCGTATTCTTCGGCGGGGAAGAAACCTTCCGTCAGGCG
GCGGCTACTGTCAAAGTCCGTCAGACGGCATTGGGCAATATGCTCAAACGGGTATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-289)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BLY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

81.928

99.828

0.818