Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6G29_RS04470 Genome accession   NZ_CP065725
Coordinates   866252..867574 (-) Length   440 a.a.
NCBI ID   WP_018574153.1    Uniprot ID   -
Organism   Oligella ureolytica strain FDAARGOS_872     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861252..872574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G29_RS04445 (I6G29_04430) nusB 862114..862551 (-) 438 WP_026253609.1 transcription antitermination factor NusB -
  I6G29_RS04450 (I6G29_04435) ribH 862569..863108 (-) 540 WP_018574149.1 6,7-dimethyl-8-ribityllumazine synthase -
  I6G29_RS04455 (I6G29_04440) ribBA 863156..864352 (-) 1197 WP_018574150.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  I6G29_RS04460 (I6G29_04445) - 864715..865203 (+) 489 WP_018574151.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G29_RS04465 (I6G29_04450) - 865225..866214 (+) 990 WP_018574152.1 CYTH domain-containing protein -
  I6G29_RS04470 (I6G29_04455) pilA 866252..867574 (-) 1323 WP_018574153.1 signal recognition particle-docking protein FtsY Machinery gene
  I6G29_RS04475 (I6G29_04460) rsmD 867718..868317 (+) 600 WP_018574154.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6G29_RS04480 (I6G29_04465) coaD 868361..868906 (+) 546 WP_018574155.1 pantetheine-phosphate adenylyltransferase -
  I6G29_RS04485 (I6G29_04470) - 868955..869218 (+) 264 WP_026253612.1 YfhL family 4Fe-4S dicluster ferredoxin -
  I6G29_RS04490 (I6G29_04475) - 869294..871789 (-) 2496 WP_018574157.1 AsmA family protein -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 46564.66 Da        Isoelectric Point: 4.4889

>NTDB_id=513559 I6G29_RS04470 WP_018574153.1 866252..867574(-) (pilA) [Oligella ureolytica strain FDAARGOS_872]
MFRFFRRKKSKEENKVNQEPESTLVPEQVEESESEVAGVEPEEATLTPSAPAAPSEPETVPAPASSPSPVTESGSVEPKV
TDEAIESEPMVEARVEEVGAVSETGPVATPEAAEEAKLVVPATEAVQEQPVQEAEPAPKASWMQRLRQGLSRTGSNIGSL
FVGVKVDEELFEELETALLMADAGIEATESLLTKLRAKVKQQRIEEGEQVKEALKELLTEHLKPLEKSFMLPLDGTSVVM
IAGVNGAGKTTSIGKLAHHFQASGASVLLAAGDTFRAAAREQLVEWGKRNNVAVISQDGGDPAAVAFDAVNAGKARQANV
VMIDTAGRLPTQLHLMEELKKIKRVINKADNEAPHEVLLVVDGNTGQNVITQIKTFDAALGLTGLVVTKLDGTAKGGTLA
AVAAGSQGVRPVPVYWIGVGESLHDLQPFSAAEFASALLG

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=513559 I6G29_RS04470 WP_018574153.1 866252..867574(-) (pilA) [Oligella ureolytica strain FDAARGOS_872]
ATGTTTAGATTTTTTCGACGAAAAAAGTCAAAAGAAGAAAATAAAGTTAATCAGGAGCCTGAATCCACGCTAGTGCCGGA
GCAGGTGGAAGAGAGCGAGTCGGAAGTAGCAGGTGTTGAGCCTGAGGAGGCTACACTGACACCTAGCGCGCCGGCAGCGC
CTAGTGAACCAGAGACTGTTCCAGCTCCAGCATCAAGTCCTAGTCCAGTCACTGAGTCTGGGTCAGTGGAGCCTAAAGTA
ACTGATGAAGCAATTGAGTCTGAGCCGATGGTCGAGGCTCGCGTAGAAGAGGTCGGAGCAGTCAGTGAAACTGGCCCAGT
GGCAACACCCGAAGCAGCTGAGGAAGCAAAATTAGTCGTTCCTGCTACTGAAGCGGTGCAAGAGCAGCCTGTACAAGAGG
CTGAGCCAGCTCCCAAGGCGTCTTGGATGCAGCGCTTACGACAGGGATTGTCTCGAACCGGCTCAAATATTGGATCCTTA
TTTGTTGGTGTGAAGGTTGATGAGGAGCTTTTTGAGGAGCTAGAGACCGCCTTGTTGATGGCTGATGCCGGTATTGAGGC
AACAGAGTCTTTGCTTACTAAGTTACGAGCCAAGGTTAAGCAGCAACGAATTGAAGAGGGTGAGCAGGTTAAAGAGGCGC
TGAAAGAGTTGCTAACAGAGCATCTGAAGCCTTTAGAAAAGTCATTTATGTTGCCGTTAGACGGTACGTCTGTGGTCATG
ATTGCAGGGGTAAACGGCGCCGGTAAAACAACATCAATTGGTAAGTTAGCTCATCATTTTCAAGCGTCCGGTGCCAGCGT
CTTATTGGCAGCGGGTGATACCTTCCGGGCCGCTGCACGCGAACAGCTTGTTGAATGGGGCAAGCGGAATAATGTCGCGG
TTATTTCTCAAGATGGTGGAGATCCAGCAGCGGTTGCCTTTGATGCAGTAAATGCCGGCAAGGCGCGTCAGGCCAATGTT
GTGATGATTGATACGGCTGGTCGCCTACCGACGCAGTTACACCTGATGGAAGAGCTTAAGAAAATTAAGCGAGTGATTAA
CAAAGCGGATAATGAAGCGCCTCACGAAGTATTACTGGTGGTCGATGGTAATACCGGTCAAAACGTGATTACACAGATTA
AAACCTTTGATGCGGCACTTGGATTGACCGGTTTGGTCGTGACCAAGCTTGATGGCACCGCCAAAGGCGGTACCCTTGCC
GCCGTTGCTGCCGGTAGTCAGGGAGTCAGGCCTGTGCCTGTCTATTGGATTGGCGTGGGTGAGTCGTTGCATGATCTGCA
ACCCTTCAGTGCTGCTGAGTTTGCCAGTGCATTGCTTGGTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(156-216)

SRP54-type protein, GTPase domain (SRP54)

(237-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.786

100

0.502