Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KWY94_RS05355 Genome accession   NZ_CP078113
Coordinates   1024810..1025421 (+) Length   203 a.a.
NCBI ID   WP_218461146.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain O2D156     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019810..1030421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY94_RS05330 (KWY94_05330) - 1020126..1020707 (-) 582 WP_003690895.1 superoxide dismutase -
  KWY94_RS05335 (KWY94_05335) dnaB 1020871..1022277 (+) 1407 WP_218461143.1 replicative DNA helicase -
  KWY94_RS05340 (KWY94_05340) pilH 1022585..1023262 (+) 678 WP_218461144.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY94_RS05345 (KWY94_05345) pilV/pilI 1023294..1023902 (+) 609 WP_218461145.1 type IV pilus modification protein PilV Regulator
  KWY94_RS05350 (KWY94_05350) pilJ 1023899..1024831 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  KWY94_RS05355 (KWY94_05355) pilK 1024810..1025421 (+) 612 WP_218461146.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY94_RS05360 (KWY94_05360) pilL 1025423..1025896 (+) 474 WP_218461157.1 PilX family type IV pilin Machinery gene
  KWY94_RS05365 (KWY94_05365) - 1025966..1026274 (-) 309 WP_025456241.1 AzlD family protein -
  KWY94_RS05370 (KWY94_05370) - 1026271..1026981 (-) 711 Protein_1031 AzlC family ABC transporter permease -
  KWY94_RS05375 (KWY94_05375) dut 1027147..1027599 (+) 453 WP_003687923.1 dUTP diphosphatase -
  KWY94_RS05380 (KWY94_05380) dapC 1027671..1028858 (+) 1188 WP_218461147.1 succinyldiaminopimelate transaminase -
  KWY94_RS05385 (KWY94_05385) yaaA 1029014..1029793 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22011.88 Da        Isoelectric Point: 8.0862

>NTDB_id=513472 KWY94_RS05355 WP_218461146.1 1024810..1025421(+) (pilK) [Neisseria gonorrhoeae strain O2D156]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMS
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=513472 KWY94_RS05355 WP_218461146.1 1024810..1025421(+) (pilK) [Neisseria gonorrhoeae strain O2D156]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGTCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956