Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   I6G39_RS03790 Genome accession   NZ_CP065712
Coordinates   773905..774621 (-) Length   238 a.a.
NCBI ID   WP_059107652.1    Uniprot ID   -
Organism   Staphylococcus auricularis strain FDAARGOS_882     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 768905..779621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G39_RS03770 (I6G39_03770) - 769504..770145 (+) 642 WP_059107648.1 redox-sensing transcriptional repressor Rex -
  I6G39_RS03775 (I6G39_03775) - 770347..771315 (+) 969 WP_059107649.1 LacI family DNA-binding transcriptional regulator -
  I6G39_RS03780 (I6G39_03780) - 771388..772863 (+) 1476 WP_059107650.1 sucrose-6-phosphate hydrolase -
  I6G39_RS03785 (I6G39_03785) - 772869..773834 (+) 966 WP_059107651.1 carbohydrate kinase -
  I6G39_RS03790 (I6G39_03790) agrA 773905..774621 (-) 717 WP_059107652.1 quorum-sensing response regulator AgrA Regulator
  I6G39_RS03795 (I6G39_03795) agrC 774634..775926 (-) 1293 WP_059107653.1 quorum-sensing sensor histidine kinase AgrC -
  I6G39_RS03800 (I6G39_03800) agrD 775952..776092 (-) 141 WP_083498188.1 cyclic lactone autoinducer peptide AgrD -
  I6G39_RS03805 (I6G39_03805) - 776089..776664 (-) 576 WP_059107654.1 accessory gene regulator AgrB -
  I6G39_RS10865 (I6G39_03810) - 777044..777118 (+) 75 WP_103170786.1 delta-lysin family phenol-soluble modulin -
  I6G39_RS03815 (I6G39_03815) - 777407..778192 (-) 786 WP_059107655.1 carbon-nitrogen family hydrolase -
  I6G39_RS03820 (I6G39_03820) - 778355..778983 (-) 629 Protein_733 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27707.67 Da        Isoelectric Point: 4.9755

>NTDB_id=513395 I6G39_RS03790 WP_059107652.1 773905..774621(-) (agrA) [Staphylococcus auricularis strain FDAARGOS_882]
MKIYICEDDPKQLENLKTIISNYIMIEEKEMEIELATDDPEAILEHAKDTDEIGCYFLDIQLNAEMNGMKLATELRKVDP
VGNIIFVTSHSELTYLTFIYKVAAMDFIFKDDPEEIKTRVIDCLKTAETRLKLLSQESSVETIELKRGSNSLYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELSKIDQRFFRCHNSFVINRHNIESIDSKTRTVNFKNGECCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=513395 I6G39_RS03790 WP_059107652.1 773905..774621(-) (agrA) [Staphylococcus auricularis strain FDAARGOS_882]
GTGAAAATCTATATTTGTGAAGACGATCCAAAACAATTAGAAAATCTAAAAACGATCATTAGCAATTACATTATGATTGA
AGAAAAAGAAATGGAAATCGAACTTGCGACAGATGATCCTGAGGCTATACTTGAACACGCGAAGGATACGGATGAAATCG
GTTGTTATTTCTTAGACATTCAATTAAACGCTGAAATGAATGGTATGAAACTAGCTACAGAGTTAAGAAAAGTGGATCCT
GTTGGCAATATTATCTTTGTCACAAGTCACTCCGAACTTACATACCTGACGTTTATTTATAAAGTTGCTGCAATGGACTT
CATTTTCAAAGATGATCCAGAAGAAATTAAAACCCGCGTCATCGATTGTTTAAAAACAGCTGAAACACGTCTAAAATTAT
TATCACAGGAAAGCAGTGTTGAAACGATTGAACTTAAACGTGGTAGCAATTCGCTCTATGTACAATATGATGACGTGATG
TTTTTCGAATCATCTAGTAAATCCCATCGTCTTATTGCGCATTTAGATAACCGTCAAATCGAGTTCTACGGTAGTTTGAA
AGAATTAAGTAAAATCGATCAACGTTTCTTTAGATGTCATAATAGCTTTGTCATCAATCGTCATAACATTGAATCCATCG
ATTCTAAAACACGTACGGTCAACTTTAAAAACGGTGAATGTTGTTATGCTTCTGTACGCAATATCAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(152-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

78.992

100

0.79