Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I6G39_RS00430 Genome accession   NZ_CP065712
Coordinates   94859..96484 (+) Length   541 a.a.
NCBI ID   WP_059107012.1    Uniprot ID   A0AAP8TSP8
Organism   Staphylococcus auricularis strain FDAARGOS_882     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 88242..96484 94859..96484 within 0


Gene organization within MGE regions


Location: 88242..96484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G39_RS00410 (I6G39_00410) - 89612..91042 (+) 1431 WP_059107009.1 DUF6038 family protein -
  I6G39_RS00415 (I6G39_00415) cch1 91168..92955 (+) 1788 WP_059107010.1 cassette chromosome replicative helicase -
  I6G39_RS00420 (I6G39_00420) - 93024..93299 (+) 276 WP_059107011.1 recombinase family protein -
  I6G39_RS00425 (I6G39_00425) ccrA 93490..94839 (+) 1350 Protein_86 cassette chromosome recombinase CcrA -
  I6G39_RS00430 (I6G39_00430) ccrB 94859..96484 (+) 1626 WP_059107012.1 cassette chromosome recombinase CcrB Machinery gene

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62385.37 Da        Isoelectric Point: 9.6979

>NTDB_id=513384 I6G39_RS00430 WP_059107012.1 94859..96484(+) (ccrB) [Staphylococcus auricularis strain FDAARGOS_882]
MNEMKKKRIGAYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLKDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHAPIIGKNLWDKVQARKKQVSEKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDIAALNHDIAYKQQQFDE
INTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=513384 I6G39_RS00430 WP_059107012.1 94859..96484(+) (ccrB) [Staphylococcus auricularis strain FDAARGOS_882]
ATGAATGAAATGAAGAAGAAGAGAATCGGAGCGTACATTCGCGTGTCCACAGAGAGACAAGTAGAGGGTTATAGCATAGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAATGGCTATGAACTTGTTGATATATATGCAGATCGAGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAAAGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGTAAGTTAATGCTCCAGATACTTGCAAGTTTTTCTGAAT
TTGAAAGAAATACAATTTTAGAGAATATTTACACCGGGCAACATCAAAGAGCTTTAGAGGGCTATTATCAGGGCAATCTT
CCTTTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTACCGCAAAATTGCGAATGCACTCAATCATAAAGGTTATGTCACTAAGAAGG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATTCAATTCGCAAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGCTTGAATGATAAGCCAGTAATCGCTGAAGGTAAGCACGCCCCTATTATTGG
CAAAAACTTATGGGACAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCAATC
TATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGATGGT
ACCAAGAAGCGAATACGCTATTATTCTTGTAGTAATTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGTTAG
AGCTGATGTTATAGAAAAATATGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTTAATCAAGATAGTCAAATTGATATAGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGATGAA
ATAAACACTAAACTAAAAAATCTAATTCAAACGATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACTATTCA
TCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCATCTT
ATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATGACACCCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGC
CTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Resolvase, N terminal domain (Resolvase)

(11-154)

Recombinase (Recombinase)

(179-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.258

100

0.804