Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   I6G40_RS01885 Genome accession   NZ_CP065711
Coordinates   397770..398108 (-) Length   112 a.a.
NCBI ID   WP_015900456.1    Uniprot ID   B9DNK7
Organism   Staphylococcus carnosus strain FDAARGOS_883     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392770..403108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G40_RS01865 (I6G40_01865) hemW 393160..394281 (-) 1122 WP_015900452.1 radical SAM family heme chaperone HemW -
  I6G40_RS01870 (I6G40_01870) lepA 394350..396173 (-) 1824 WP_015900453.1 translation elongation factor 4 -
  I6G40_RS01875 (I6G40_01875) rpsT 396438..396689 (+) 252 WP_015900454.1 30S ribosomal protein S20 -
  I6G40_RS01880 (I6G40_01880) holA 396722..397696 (-) 975 WP_015900455.1 DNA polymerase III subunit delta -
  I6G40_RS01885 (I6G40_01885) comEC 397770..398108 (-) 339 WP_015900456.1 ComEC/Rec2 family competence protein Machinery gene
  I6G40_RS01890 (I6G40_01890) - 398123..400006 (-) 1884 WP_015900457.1 ComEC/Rec2 family competence protein -
  I6G40_RS01895 (I6G40_01895) - 400014..400475 (-) 462 WP_015900458.1 ComE operon protein 2 -
  I6G40_RS01900 (I6G40_01900) - 400550..401218 (-) 669 WP_015900459.1 ComEA family DNA-binding protein -
  I6G40_RS01905 (I6G40_01905) - 401267..401983 (-) 717 WP_015900460.1 class I SAM-dependent methyltransferase -
  I6G40_RS01910 (I6G40_01910) rsfS 401986..402336 (-) 351 WP_015900461.1 ribosome silencing factor -
  I6G40_RS01915 (I6G40_01915) yqeK 402337..402921 (-) 585 WP_015900462.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12612.39 Da        Isoelectric Point: 10.1713

>NTDB_id=513360 I6G40_RS01885 WP_015900456.1 397770..398108(-) (comEC) [Staphylococcus carnosus strain FDAARGOS_883]
MAIIKTRKYNILTTGDATVKNESKLLANYLIPRIDILKVGHHGSKTSSSEKFINSIHPHYSVISSGKNNAYKLPNKEVIG
RLNKVNSQIYNTQKNGQITFNLDDEIQVLTEQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=513360 I6G40_RS01885 WP_015900456.1 397770..398108(-) (comEC) [Staphylococcus carnosus strain FDAARGOS_883]
ATGGCAATCATTAAAACACGTAAATATAATATACTAACCACTGGTGATGCAACTGTTAAAAATGAATCAAAATTATTAGC
TAATTACTTAATTCCTAGAATTGATATTTTGAAAGTAGGCCATCATGGCAGTAAAACAAGTTCTAGTGAAAAGTTTATAA
ATAGTATCCATCCTCATTATAGCGTTATTTCGAGTGGTAAAAACAACGCATATAAACTTCCAAATAAAGAAGTAATAGGC
CGTCTAAATAAAGTAAATTCTCAAATATATAATACTCAAAAAAATGGACAGATAACATTTAATCTAGATGATGAAATACA
AGTATTAACAGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DNK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

61.224

87.5

0.536
  comEC Staphylococcus aureus MW2

61.224

87.5

0.536
  comEC Lactococcus lactis subsp. cremoris KW2

48.864

78.571

0.384
  rec2 Haemophilus influenzae Rd KW20

42.157

91.071

0.384