Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   I6G41_RS13705 Genome accession   NZ_CP065710
Coordinates   2734655..2736004 (+) Length   449 a.a.
NCBI ID   WP_031920592.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_884     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 2723951..2736004 2734655..2736004 within 0


Gene organization within MGE regions


Location: 2723951..2736004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G41_RS13650 (I6G41_13650) - 2723951..2725876 (-) 1926 WP_053027547.1 heavy metal translocating P-type ATPase -
  I6G41_RS13655 (I6G41_13655) - 2726206..2726532 (-) 327 WP_031920602.1 ArsR/SmtB family transcription factor -
  I6G41_RS13660 (I6G41_13660) - 2726739..2727098 (+) 360 WP_001631039.1 hypothetical protein -
  I6G41_RS13665 (I6G41_13665) - 2727210..2727548 (-) 339 Protein_2616 recombinase family protein -
  I6G41_RS13670 (I6G41_13670) - 2727557..2727877 (+) 321 Protein_2617 hypothetical protein -
  I6G41_RS13675 (I6G41_13675) - 2727849..2728124 (+) 276 WP_119627606.1 hypothetical protein -
  I6G41_RS13680 (I6G41_13680) - 2728731..2730149 (-) 1419 WP_031920597.1 RNA-binding domain-containing protein -
  I6G41_RS13685 (I6G41_13685) - 2730296..2731834 (+) 1539 WP_031920596.1 hypothetical protein -
  I6G41_RS13690 (I6G41_13690) - 2732067..2732306 (+) 240 WP_031920595.1 hypothetical protein -
  I6G41_RS13695 (I6G41_13695) cch1 2732332..2734119 (+) 1788 WP_197910907.1 cassette chromosome replicative helicase -
  I6G41_RS13700 (I6G41_13700) - 2734188..2734463 (+) 276 WP_031920593.1 hypothetical protein -
  I6G41_RS13705 (I6G41_13705) ccrA 2734655..2736004 (+) 1350 WP_031920592.1 cassette chromosome recombinase CcrA Machinery gene

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52011.81 Da        Isoelectric Point: 10.0093

>NTDB_id=513349 I6G41_RS13705 WP_031920592.1 2734655..2736004(+) (ccrA) [Staphylococcus equorum strain FDAARGOS_884]
MKQAIGYLRQSTTKQQSLAAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYQYH
NGTFTIDTVKAPTIKAVFSYYLQGYGYKKIAQYLEADEKFINRKPYQVRNIIMNPNYCGRVINQYGQYDNMCPSIVSTSI
YEQAQAIRSQKQLKRTSSANQLKQKIKCPYCGSTLTNITIRKKHRTLRYYVCPQNMNASRFVCEFKGINAQSLEASVLAT
CQDFFQNQQLYSKINHTIQQRLKKQKDIEAKSTLTQEQLIEKLAQCKIDAETFREQTQSLCQQSKPISSIHTHQIRKALQ
NVIQQRFTLNMLYPYIDEIHITKSKTLTGIYFKNEPLNIVNQTAQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=513349 I6G41_RS13705 WP_031920592.1 2734655..2736004(+) (ccrA) [Staphylococcus equorum strain FDAARGOS_884]
ATGAAACAAGCAATAGGTTACTTACGTCAAAGTACAACAAAACAACAATCTCTAGCAGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTATGTCAAAAATACCATGTTCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCCGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCAATATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTATTCAGTTATTATCTTCAAGGCTATGGTTA
TAAAAAAATTGCACAGTACTTAGAAGCTGACGAGAAATTCATCAATCGTAAACCCTATCAAGTACGTAATATTATCATGA
ACCCCAATTATTGTGGTCGAGTCATTAATCAATACGGGCAATATGACAACATGTGTCCTTCTATTGTTTCGACAAGTATA
TATGAACAAGCTCAAGCGATACGATCACAAAAGCAACTCAAACGGACATCATCAGCTAATCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTGGTTCAACGTTGACTAATATAACCATTAGAAAAAAGCACCGTACATTACGTTATTATGTCTGTCCAC
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGAATCAACGCACAATCATTAGAAGCGAGTGTCTTAGCTACA
TGTCAAGACTTCTTTCAAAATCAACAGTTGTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAAACAAAAAGA
CATAGAAGCTAAAAGTACACTTACGCAAGAACAACTGATAGAAAAATTAGCCCAATGTAAAATTGATGCAGAAACATTCA
GAGAACAAACGCAATCATTATGTCAACAATCCAAACCTATATCATCAATCCATACGCATCAAATTCGAAAGGCTTTACAA
AATGTCATTCAACAACGTTTCACGTTAAACATGTTGTACCCTTACATCGATGAAATTCATATTACCAAAAGTAAAACGCT
TACAGGTATCTATTTCAAAAATGAGCCCTTAAACATCGTCAATCAAACAGCACAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

88.864

100

0.889
  ccrA Staphylococcus aureus N315

76.615

100

0.766