Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   I6G41_RS09305 Genome accession   NZ_CP065710
Coordinates   1796945..1797661 (+) Length   238 a.a.
NCBI ID   WP_002507139.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_884     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791945..1802661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G41_RS09280 (I6G41_09280) - 1792497..1793126 (+) 630 WP_002507144.1 nitroreductase family protein -
  I6G41_RS09285 (I6G41_09285) - 1793360..1794145 (+) 786 WP_002507143.1 carbon-nitrogen family hydrolase -
  I6G41_RS09290 (I6G41_09290) - 1794905..1795474 (+) 570 WP_002507142.1 accessory gene regulator AgrB -
  I6G41_RS09295 (I6G41_09295) agrD 1795477..1795614 (+) 138 WP_002507141.1 cyclic lactone autoinducer peptide AgrD -
  I6G41_RS14190 (I6G41_09300) agrC 1795638..1796932 (+) 1295 Protein_1752 quorum-sensing sensor histidine kinase AgrC -
  I6G41_RS09305 (I6G41_09305) agrA 1796945..1797661 (+) 717 WP_002507139.1 quorum-sensing response regulator AgrA Regulator
  I6G41_RS09310 (I6G41_09310) - 1797699..1798667 (-) 969 WP_002507138.1 carbohydrate kinase family protein -
  I6G41_RS09315 (I6G41_09315) - 1798664..1800148 (-) 1485 WP_002507137.1 sucrose-6-phosphate hydrolase -
  I6G41_RS09320 (I6G41_09320) - 1800241..1801203 (-) 963 WP_002507136.1 LacI family DNA-binding transcriptional regulator -
  I6G41_RS09325 (I6G41_09325) - 1801347..1801574 (-) 228 WP_002507135.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.75 Da        Isoelectric Point: 4.9764

>NTDB_id=513344 I6G41_RS09305 WP_002507139.1 1796945..1797661(+) (agrA) [Staphylococcus equorum strain FDAARGOS_884]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=513344 I6G41_RS09305 WP_002507139.1 1796945..1797661(+) (agrA) [Staphylococcus equorum strain FDAARGOS_884]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCCGATCCTTATGAAGTTTTAGAACGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCCGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAAGCACGACCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAGTAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCATTTAGACAATAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGGTGTCATAACAGTTTCGTTGTTAACAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAACCAAGAACATTGCTTTGCTTCAGTAAGAAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866