Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   I6G42_RS04350 Genome accession   NZ_CP065707
Coordinates   891022..891315 (+) Length   97 a.a.
NCBI ID   WP_050562294.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 886022..896315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS04325 (I6G42_04325) - 886870..888021 (+) 1152 WP_000042199.1 restriction endonuclease subunit S -
  I6G42_RS04330 (I6G42_04330) - 888075..889676 (+) 1602 WP_000450450.1 type I restriction-modification system subunit M -
  I6G42_RS04335 (I6G42_04335) - 889757..890161 (+) 405 WP_000438473.1 YbgA family protein -
  I6G42_RS04340 (I6G42_04340) - 890145..890510 (+) 366 WP_001241808.1 TIGR02328 family protein -
  I6G42_RS04345 (I6G42_04345) - 890667..891032 (+) 366 WP_038804830.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I6G42_RS04350 (I6G42_04350) HI0659 891022..891315 (+) 294 WP_050562294.1 helix-turn-helix domain-containing protein Machinery gene
  I6G42_RS04355 (I6G42_04355) metE 891668..893917 (+) 2250 WP_000108239.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  I6G42_RS04360 (I6G42_04360) metF 894012..894878 (+) 867 WP_038804832.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10793.46 Da        Isoelectric Point: 5.1991

>NTDB_id=513299 I6G42_RS04350 WP_050562294.1 891022..891315(+) (HI0659) [Streptococcus oralis strain FDAARGOS_885]
MKNSAIGSNWKDIRTELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=513299 I6G42_RS04350 WP_050562294.1 891022..891315(+) (HI0659) [Streptococcus oralis strain FDAARGOS_885]
ATGAAGAATAGTGCCATTGGAAGTAATTGGAAGGATATCCGAACAGAACTCTTTACCAAGGAAGAAATTCTTGAAAGTGA
TATGCGAGTGGCTATTATGAGTGAGTTGATTGAGGCTAGACATGAGCAAGGTATCAGTCAGAAAAAGCTAGAGGAACTCA
GTGGAGTAAGCCAGCCTGTCATAGCTAGGATGGAAACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTGAAAGTTCTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTAGAACAGGAAAAAAATTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557