Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   KUU69_RS09510 Genome accession   NZ_CP078007
Coordinates   2023340..2023669 (+) Length   109 a.a.
NCBI ID   WP_023116253.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FAHZU40     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2018340..2028669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU69_RS09495 (KUU69_09495) - 2019140..2020096 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  KUU69_RS09500 (KUU69_09500) - 2020098..2021117 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  KUU69_RS09505 (KUU69_09505) - 2021152..2023149 (+) 1998 WP_023128731.1 polysaccharide biosynthesis protein -
  KUU69_RS09510 (KUU69_09510) comEA/comE1 2023340..2023669 (+) 330 WP_023116253.1 ComEA family DNA-binding protein Machinery gene
  KUU69_RS09520 (KUU69_09520) - 2023886..2025082 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  KUU69_RS09525 (KUU69_09525) uvrB 2025270..2027282 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11427.41 Da        Isoelectric Point: 8.0374

>NTDB_id=513256 KUU69_RS09510 WP_023116253.1 2023340..2023669(+) (comEA/comE1) [Pseudomonas aeruginosa strain FAHZU40]
MHLIKSALLLILFACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=513256 KUU69_RS09510 WP_023116253.1 2023340..2023669(+) (comEA/comE1) [Pseudomonas aeruginosa strain FAHZU40]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385