Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   I6G43_RS03665 Genome accession   NZ_CP065706
Coordinates   780711..782969 (-) Length   752 a.a.
NCBI ID   WP_000882491.1    Uniprot ID   A0A7T2ZPB8
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 775711..787969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS03645 (I6G43_03645) - 776826..778169 (+) 1344 WP_009014055.1 DEAD/DEAH box helicase -
  I6G43_RS03650 (I6G43_03650) metK 778513..779703 (+) 1191 WP_038806277.1 methionine adenosyltransferase -
  I6G43_RS03655 (I6G43_03655) - 779769..780068 (-) 300 WP_000767190.1 DUF1827 family protein -
  I6G43_RS03660 (I6G43_03660) - 780127..780579 (-) 453 WP_038806276.1 NUDIX hydrolase -
  I6G43_RS03665 (I6G43_03665) clpE 780711..782969 (-) 2259 WP_000882491.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  I6G43_RS03670 (I6G43_03670) - 783206..783436 (-) 231 WP_000443579.1 DUF1797 family protein -
  I6G43_RS03675 (I6G43_03675) - 783627..784310 (+) 684 WP_001011625.1 amino acid ABC transporter permease -
  I6G43_RS03680 (I6G43_03680) - 784310..785044 (+) 735 WP_038806275.1 amino acid ABC transporter ATP-binding protein -
  I6G43_RS03685 (I6G43_03685) - 785078..785398 (+) 321 WP_038806274.1 TfoX/Sxy family protein -
  I6G43_RS03690 (I6G43_03690) - 785548..786405 (+) 858 WP_038806273.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  I6G43_RS03695 (I6G43_03695) - 786410..787183 (+) 774 WP_038806272.1 HAD hydrolase family protein -

Sequence


Protein


Download         Length: 752 a.a.        Molecular weight: 83995.38 Da        Isoelectric Point: 5.0400

>NTDB_id=513216 I6G43_RS03665 WP_000882491.1 780711..782969(-) (clpE) [Streptococcus oralis strain FDAARGOS_886]
MLCQNCKINDSTIHLYTNINGQQKQIDLCQNCYKIIKTDPNNTLFKGMTDLNNRDFDPFGDFFNDLNNFRPSSNNIPPTQ
SGGGDGDNGGYGPQNRGPLQTPPSQERGLLEEYGINITEIARRGDIDPVIGRDEEIIRVIEILNRRTKNNPVLIGEPGVG
KTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKREDIILFIDEIHEIVGAGSAGDG
NMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETITILKGIQKKYEDYHHVKYTDAAIEA
AANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKAQATREEDFEKAAYFRDQIAKYKEMQKN
KVTDQDTPIISEKTIEHIIEQKTNIPVGELKEKEQAQLIHLADDLKAHVIGQDEAVDKIAKAIRRNRVGLGTPNRPIGSF
LFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDEVEK
AHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDGI
IEFKPLSKDNLLQIVELMLADVNKRLSSNNIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDHIEDAITDYYLENPSEK
DLKAVMTSNGKIQIKSAKKTEKIEEIASEKEE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=513216 I6G43_RS03665 WP_000882491.1 780711..782969(-) (clpE) [Streptococcus oralis strain FDAARGOS_886]
ATGCTCTGTCAAAACTGTAAAATAAACGACTCAACAATTCATCTGTATACCAATATCAATGGACAGCAAAAGCAAATTGA
TCTTTGTCAAAACTGCTATAAAATTATCAAAACAGATCCAAATAATACCCTCTTTAAAGGAATGACTGACTTAAACAATC
GTGACTTTGATCCTTTCGGAGACTTTTTCAATGATTTGAACAATTTCAGACCTTCTTCTAATAACATCCCTCCCACTCAA
TCAGGTGGAGGAGATGGGGACAATGGGGGCTACGGGCCTCAAAACCGCGGTCCACTTCAAACACCTCCTAGCCAAGAAAG
AGGACTCCTTGAGGAATACGGTATCAATATTACTGAGATTGCTCGTCGGGGAGATATTGACCCTGTTATAGGTCGAGATG
AGGAGATTATCCGCGTTATCGAAATCCTCAACCGTCGAACCAAGAACAACCCTGTCCTTATCGGAGAACCAGGTGTTGGT
AAAACTGCCGTTGTCGAAGGTCTAGCTCAGAAGATTGTCGATGGCGATGTTCCCCATAAACTTCAAGGCAAGCAGGTCAT
CCGTCTGGATGTGGTCAGTCTAGTTCAAGGAACAGGGATTCGAGGCCAATTTGAAGAGCGTATGCAGAAGCTCATGGAAG
AAATCCGCAAACGCGAGGACATCATTCTCTTTATCGATGAAATCCATGAAATTGTCGGTGCAGGATCTGCTGGCGATGGC
AATATGGATGCAGGAAATATCCTCAAACCTGCCCTTGCCCGTGGTGAATTGCAACTGGTCGGTGCCACTACTCTCAATGA
ATACCGTATCATTGAAAAAGATGCTGCTCTAGAGCGCCGTATGCAGCCTGTCAAGGTAGATGAACCAACTGTCGAAGAAA
CCATCACCATCCTCAAAGGGATTCAAAAGAAATACGAAGACTACCATCACGTCAAGTATACTGATGCTGCTATCGAAGCT
GCTGCAAATCTTTCCAACCGCTACATCCAAGACCGCTTCTTGCCAGACAAGGCTATTGACCTTTTAGACGAAGCCGGTTC
AAAGATGAATCTGACGCTGAACTTTGTTGATCCTAAAGTGATTGACCAGCGCTTGATTGAGGCTGAGAATCTCAAGGCTC
AAGCTACACGAGAGGAAGACTTTGAAAAGGCTGCCTATTTCCGCGATCAGATTGCCAAGTACAAGGAAATGCAGAAAAAC
AAGGTGACCGATCAGGATACTCCTATCATTAGCGAGAAAACAATCGAACACATCATTGAGCAGAAAACCAATATTCCTGT
TGGAGAACTCAAAGAAAAAGAACAGGCTCAGCTTATCCATCTAGCAGACGACCTCAAAGCTCATGTCATTGGTCAAGATG
AAGCTGTCGATAAGATTGCCAAGGCCATCCGTCGTAATCGTGTTGGACTTGGAACTCCTAACCGCCCAATCGGAAGCTTC
CTCTTTGTCGGACCAACTGGTGTCGGTAAGACAGAACTTTCCAAACAACTAGCCATTGAACTCTTTGGTTCTGCTGACAG
CATGATTCGCTTTGATATGAGTGAATACATGGAAAAACACAGTGTGGCTAAATTGGTCGGAGCCCCTCCAGGCTATGTAG
GCTACGATGAAGCTGGTCAGTTAACGGAAAAAGTTCGTCGCAATCCTTACTCACTCATCCTTCTCGATGAAGTTGAAAAA
GCCCACCCAGATGTGATGCACATGTTCCTCCAAGTCTTGGACGATGGTCGTTTGACTGATGGGCAAGGACGAACAGTTAG
CTTTAAGGATGCCATCATTATCATGACCTCAAATGCGGGTACTGGTAAAGCCGAAGCCAGCGTTGGTTTTGGAGCTGCTC
GTGAAGGTCGAACCAACTCTGTTCTCGGTGAACTCGGCAACTTCTTTAGTCCTGAGTTTATGAACCGTTTTGACGGCATC
ATCGAATTTAAACCTCTCAGCAAGGACAACCTTCTCCAAATCGTCGAACTCATGCTAGCAGATGTCAACAAACGTCTCTC
CAGCAACAATATCCACCTTGATGTGACAGACAAGGTCAAGGAAAAGTTGGTTGACTTGGGATATGATCCAAAAATGGGGG
CACGCCCACTCCGCCGTACCATTCAAGACCATATCGAGGATGCCATCACAGACTACTACCTTGAAAACCCAAGTGAAAAA
GACCTCAAGGCAGTTATGACAAGCAATGGTAAGATTCAAATCAAATCTGCCAAAAAAACTGAAAAAATAGAAGAGATTGC
TTCTGAAAAAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7T2ZPB8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

95.027

98.936

0.94

  clpE Streptococcus pneumoniae D39

95.027

98.936

0.94

  clpE Streptococcus pneumoniae R6

95.027

98.936

0.94

  clpE Streptococcus pneumoniae TIGR4

94.892

98.936

0.939

  clpE Streptococcus mutans UA159

83.554

100

0.838

  clpC Lactococcus lactis subsp. cremoris KW2

78.082

97.074

0.758

  clpC Bacillus subtilis subsp. subtilis str. 168

52.615

86.436

0.455

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.546

86.702

0.412

  clpC Streptococcus thermophilus LMD-9

46.751

83.91

0.392

  clpC Streptococcus pneumoniae Rx1

47.343

82.58

0.391

  clpC Streptococcus pneumoniae D39

47.343

82.58

0.391

  clpC Streptococcus pneumoniae TIGR4

47.343

82.58

0.391

  clpC Streptococcus thermophilus LMG 18311

46.508

83.777

0.39

  clpC Streptococcus mutans UA159

46.508

83.777

0.39