Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G43_RS00970 Genome accession   NZ_CP065706
Coordinates   205609..206970 (+) Length   453 a.a.
NCBI ID   WP_068981986.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 200609..211970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS09280 comW 200930..201163 (+) 234 WP_000939517.1 sigma(X)-activator ComW -
  I6G43_RS00940 (I6G43_00940) - 201401..202687 (+) 1287 WP_025168358.1 adenylosuccinate synthase -
  I6G43_RS00945 (I6G43_00945) - 203171..203716 (-) 546 WP_000976886.1 hypothetical protein -
  I6G43_RS00950 (I6G43_00950) tadA 203982..204449 (+) 468 WP_000386762.1 tRNA adenosine(34) deaminase TadA -
  I6G43_RS00960 (I6G43_00960) - 204635..205078 (+) 444 WP_000701981.1 dUTP diphosphatase -
  I6G43_RS00965 (I6G43_00965) - 205080..205595 (+) 516 WP_000691232.1 histidine phosphatase family protein -
  I6G43_RS00970 (I6G43_00970) radA 205609..206970 (+) 1362 WP_068981986.1 DNA repair protein RadA Machinery gene
  I6G43_RS00975 (I6G43_00975) - 207043..207537 (+) 495 WP_038806562.1 beta-class carbonic anhydrase -
  I6G43_RS00980 (I6G43_00980) - 207752..208720 (+) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  I6G43_RS00985 (I6G43_00985) - 208841..209278 (+) 438 WP_000076478.1 CoA-binding protein -
  I6G43_RS00990 (I6G43_00990) - 209305..210315 (-) 1011 WP_038806553.1 YeiH family protein -
  I6G43_RS00995 (I6G43_00995) - 210467..211636 (+) 1170 WP_038806552.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49448.96 Da        Isoelectric Point: 5.8716

>NTDB_id=513187 I6G43_RS00970 WP_068981986.1 205609..206970(+) (radA) [Streptococcus oralis strain FDAARGOS_886]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRVEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKMVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=513187 I6G43_RS00970 WP_068981986.1 205609..206970(+) (radA) [Streptococcus oralis strain FDAARGOS_886]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGTCCCAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTATCCTTGACAGGGGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCAATCAATGTCAATCGAACAAAGACCGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTAGTACCCGGAAGTCTTGTTCTCATCGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCCTACA
GGTCTCGACCCAGTTGTCTCAAGTAGGGACCGTTCTCTATGTCAGTGGGGAGGAGTCTGCTCAGCAGATTAAGTTACGGG
CAGAGCGCTTGGGAGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGCGTAGAAGTAGAA
AGAATTCAGCCAGACTTCCTCATTATTGACTCCATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
GTCTCAGGTGCGTGAGGTGACGGCTGAGCTTATGCAACTGGCTAAGACTAATAACATTGCCATTTTTATCGTAGGGCATG
TGACTAAGGAAGGAACCTTGGCTGGTCCGCGTATGTTGGAGCACATGGTAGATACGGTACTTTACTTTGAAGGGGAGCGC
CACCATACCTTCCGTATCCTGAGAGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCAGTC
AGGTGGATTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAATCG
TTGTGACCATGGAAGGGACCCGTCCGATTTTGGCGGAGGTACAGGCTTTGGTAACACCGACCATGTTTGGGAATGCCAAG
CGTACTACGACAGGACTTGATTTCAATCGTGCGAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTGAAATTGGATGAGCCTGCCATTGACTTGGCTGTTGCTGTGGCTA
TTGCCTCTAGTTACAAGGACAAGCCTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGG
CGCGTGAATCGTATCGAACAACGCATCAATGAAGCGGCTAAGCTTGGATTTACAAAAATCTATGTACCCAAGAATTCCTT
GACAGGAATCACTCCACCCAAGGAAATTGAGGTCATTGGTGTGACAACGATTCAGGAAGTTCTGAAAATGGTCTTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.338

100

0.993
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Streptococcus pneumoniae Rx1

99.117

100

0.991
  radA Streptococcus pneumoniae D39

99.117

100

0.991
  radA Streptococcus pneumoniae R6

99.117

100

0.991
  radA Streptococcus pneumoniae TIGR4

99.117

100

0.991
  radA Bacillus subtilis subsp. subtilis str. 168

63.355

100

0.634