Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   N565_RS03425 Genome accession   NC_022351
Coordinates   636329..636712 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni 00-2538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 631329..641712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N565_RS03405 (N565_00665) - 631408..633342 (-) 1935 WP_002858479.1 ribonuclease R family protein -
  N565_RS03410 (N565_00666) ilvC 633461..634483 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  N565_RS03415 (N565_00667) - 634487..635569 (+) 1083 WP_002858589.1 divergent polysaccharide deacetylase family protein -
  N565_RS03420 (N565_00668) dprA 635559..636332 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  N565_RS03425 (N565_00669) dprB 636329..636712 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  N565_RS03430 (N565_00670) - 636741..637580 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  N565_RS03435 (N565_00671) msrA 637756..638253 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  N565_RS03440 (N565_00672) ppa 638294..638812 (-) 519 WP_002858521.1 inorganic diphosphatase -
  N565_RS03445 (N565_00673) adk 638822..639400 (-) 579 WP_002858481.1 adenylate kinase -
  N565_RS03450 (N565_00674) aspS 639397..641148 (-) 1752 WP_002858612.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=51312 N565_RS03425 WP_002858579.1 636329..636712(+) (dprB) [Campylobacter jejuni subsp. jejuni 00-2538]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=51312 N565_RS03425 WP_002858579.1 636329..636712(+) (dprB) [Campylobacter jejuni subsp. jejuni 00-2538]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment