Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G48_RS14190 Genome accession   NZ_CP065695
Coordinates   3076324..3077709 (+) Length   461 a.a.
NCBI ID   WP_034397813.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_891     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3071324..3082709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G48_RS14165 (I6G48_14160) lplT 3072146..3073447 (-) 1302 WP_012202249.1 lysophospholipid transporter LplT -
  I6G48_RS14170 (I6G48_14165) alr 3073582..3074685 (+) 1104 WP_012202250.1 alanine racemase -
  I6G48_RS14175 (I6G48_14170) - 3074686..3075126 (-) 441 WP_012202251.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G48_RS14180 (I6G48_14175) - 3075223..3076035 (+) 813 WP_012202252.1 siderophore-interacting protein -
  I6G48_RS14190 (I6G48_14185) radA 3076324..3077709 (+) 1386 WP_034397813.1 DNA repair protein RadA Machinery gene
  I6G48_RS14195 (I6G48_14190) - 3077789..3078226 (+) 438 WP_012202254.1 hypothetical protein -
  I6G48_RS14200 (I6G48_14195) - 3078271..3079209 (+) 939 WP_012202255.1 branched-chain amino acid transaminase -
  I6G48_RS14205 (I6G48_14200) - 3079245..3079454 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  I6G48_RS14210 (I6G48_14205) - 3079486..3080352 (-) 867 WP_043780325.1 capsular polysaccharide synthesis protein -
  I6G48_RS14215 (I6G48_14210) - 3080484..3081752 (+) 1269 WP_012202258.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48142.71 Da        Isoelectric Point: 7.6673

>NTDB_id=513073 I6G48_RS14190 WP_034397813.1 3076324..3077709(+) (radA) [Delftia acidovorans strain FDAARGOS_891]
MAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIAGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=513073 I6G48_RS14190 WP_034397813.1 3076324..3077709(+) (radA) [Delftia acidovorans strain FDAARGOS_891]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGAGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAACTCTCTGATCGAGGCCGTTGCCGAGCCTGCGAGCGCGGGCAAGAACCGGCTCAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGTCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGATCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCGTCGGCCTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTG
GAGAAAATCCTCGCCACCATGGAGGCCACCCAGCCGGCCGTGGTCGTCATCGACTCCATACAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCACTGGCCGGACCGCGCGTGCTGGAGCACATGGTGGACACG
GTGCTCTACTTCGAGGGCGATACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTGACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCCGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCCATGCTGGTGGAGATACAGGCCCTGGTCGAT
CAGGGCGGCCCCGCGCCGCGTCGCCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCACGCGGGCGTGGCCTGCGCGGACCAGGATGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACTTCCAGTCTGCGTGGCCGCGCCCTGCCCAAGGGATTCCTCGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCACCATGGC
CGTGGTACCCAAGGCCAATGCGCCCAAGAAGGCCATCGCTGGTCTGACCGTTCATGCCGTCGAACGCGTGGACGAGGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

99.783

0.486
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus mitis SK321

48.09

96.529

0.464
  radA Streptococcus pneumoniae TIGR4

47.982

96.746

0.464
  radA Streptococcus pneumoniae R6

47.982

96.746

0.464
  radA Streptococcus pneumoniae Rx1

47.982

96.746

0.464
  radA Streptococcus pneumoniae D39

47.982

96.746

0.464