Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6G48_RS06460 Genome accession   NZ_CP065695
Coordinates   1374242..1375462 (+) Length   406 a.a.
NCBI ID   WP_012203726.1    Uniprot ID   A9BUX9
Organism   Delftia acidovorans strain FDAARGOS_891     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1369242..1380462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G48_RS06440 (I6G48_06440) coaD 1370008..1370508 (-) 501 WP_013803934.1 pantetheine-phosphate adenylyltransferase -
  I6G48_RS06445 (I6G48_06445) rsmD 1370640..1371350 (-) 711 WP_012203729.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6G48_RS06450 (I6G48_06450) - 1371347..1372708 (-) 1362 WP_012203728.1 M16 family metallopeptidase -
  I6G48_RS06455 (I6G48_06455) - 1372735..1374213 (-) 1479 WP_012203727.1 M16 family metallopeptidase -
  I6G48_RS06460 (I6G48_06460) pilA 1374242..1375462 (+) 1221 WP_012203726.1 signal recognition particle-docking protein FtsY Machinery gene
  I6G48_RS06465 (I6G48_06465) - 1375701..1376690 (+) 990 WP_012203725.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  I6G48_RS06470 (I6G48_06470) cutA 1376677..1377075 (-) 399 WP_012203724.1 divalent-cation tolerance protein CutA -
  I6G48_RS06475 (I6G48_06475) - 1377128..1378153 (-) 1026 WP_012203723.1 2-dehydropantoate 2-reductase -
  I6G48_RS06480 (I6G48_06480) - 1378172..1378930 (-) 759 WP_043781010.1 class II aldolase/adducin family protein -
  I6G48_RS06485 (I6G48_06485) - 1378998..1379555 (-) 558 WP_043781007.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 42426.35 Da        Isoelectric Point: 5.7832

>NTDB_id=513064 I6G48_RS06460 WP_012203726.1 1374242..1375462(+) (pilA) [Delftia acidovorans strain FDAARGOS_891]
MFSFFKKKPTPSAAEISPADSSAAPEKAGIPATPPQDSPPALPPAAPAAPAADTGSAWWRKPFGGGKGDAAPPETPPAPA
AAPASTIAPADFIAAPEPTAKPEAEGASRQNWMQRLKTGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATEH
LLADLRRRVKEAKATDPAAVKALLADALADLLRPLEKPLVIGEHQPTVIMVAGVNGAGKTTSIGKLTRHLADEGQSVLLA
AADTFRAAAREQLGVWANRNTVEIVSQEGGDPAAVSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVSKAD
ATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREF
AQALLS

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=513064 I6G48_RS06460 WP_012203726.1 1374242..1375462(+) (pilA) [Delftia acidovorans strain FDAARGOS_891]
ATGTTCAGTTTTTTCAAGAAAAAGCCCACCCCCTCCGCCGCCGAGATTTCCCCGGCGGACAGCAGCGCCGCGCCTGAAAA
GGCCGGCATTCCCGCAACCCCACCGCAGGACAGCCCCCCCGCCCTGCCACCGGCCGCGCCAGCAGCGCCGGCCGCCGACA
CCGGCAGTGCCTGGTGGCGCAAGCCCTTTGGCGGCGGCAAGGGCGATGCCGCGCCCCCCGAGACCCCGCCTGCCCCAGCT
GCTGCACCCGCGTCCACCATCGCGCCTGCGGACTTCATTGCCGCGCCCGAGCCCACGGCCAAGCCCGAGGCCGAAGGTGC
CAGCCGCCAGAACTGGATGCAGCGCCTCAAGACCGGCCTGCGCAAGACCGGCAGCAGCATTGCCACGGTCTTCACGGGCA
CGCAGATCAACGATGCGCTGTACGAGGAACTGGAAGACGCCCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCAC
CTGCTCGCCGACCTGCGCCGCCGCGTCAAGGAGGCCAAGGCCACCGACCCCGCCGCCGTCAAGGCGCTGCTGGCCGATGC
CCTGGCCGACCTGCTGCGCCCGCTGGAAAAGCCGCTGGTCATCGGCGAGCACCAGCCCACCGTGATCATGGTGGCGGGCG
TCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCCGCCACCTGGCCGACGAAGGCCAGAGCGTGCTGCTGGCC
GCCGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTTGGCGTCTGGGCCAATCGCAACACGGTGGAGATCGTCAGCCA
GGAAGGGGGCGATCCTGCGGCCGTGAGCTTTGACGCCGTCACCGCCGGCCGCGCGCGCAAGAAGGATGTGGTGCTGGTGG
ACACGGCAGGCCGCCTGCCCACCCAGCTGCACCTGATGGAAGAGCTGCGCAAGATCCGCCGCGTGGTCAGCAAGGCCGAC
GCCACGGCACCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTGCGCGCCTTTGA
CGATGCACTGCAGCTCACGGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCTGCCATTGCCC
AGGAACGGCCGATCCCCGTGTACTTCATCGGCGTGGGTGAAAAGGTCGAGGACCTGGAGACCTTCAACGCCAGGGAATTT
GCGCAGGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(206-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(125-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9BUX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.526

100

0.515