Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G50_RS09865 Genome accession   NZ_CP065691
Coordinates   1952224..1953585 (+) Length   453 a.a.
NCBI ID   WP_042753005.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1947224..1958585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS09840 (I6G50_09835) - 1947416..1948777 (+) 1362 WP_197908710.1 TIGR03111 family XrtG-associated glycosyltransferase -
  I6G50_RS09845 (I6G50_09840) - 1948786..1949154 (+) 369 WP_197908711.1 6-carboxytetrahydropterin synthase -
  I6G50_RS09850 (I6G50_09845) - 1949151..1950686 (+) 1536 WP_197908712.1 TIGR03766 family XrtG-associated glycosyltransferase -
  I6G50_RS09855 (I6G50_09850) - 1950818..1951447 (+) 630 WP_197908713.1 Firmicu-CTERM sorting domain-containing protein -
  I6G50_RS09865 (I6G50_09860) radA 1952224..1953585 (+) 1362 WP_042753005.1 DNA repair protein RadA Machinery gene
  I6G50_RS09870 (I6G50_09865) - 1953717..1954790 (+) 1074 WP_081165475.1 PIN/TRAM domain-containing protein -
  I6G50_RS09875 (I6G50_09870) - 1954831..1955460 (+) 630 WP_197908714.1 pyridoxamine 5'-phosphate oxidase family protein -
  I6G50_RS09880 (I6G50_09875) ald 1955645..1956766 (+) 1122 WP_197908715.1 alanine dehydrogenase -
  I6G50_RS09885 (I6G50_09880) - 1956793..1957287 (-) 495 WP_003134427.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49652.98 Da        Isoelectric Point: 5.2853

>NTDB_id=513032 I6G50_RS09865 WP_042753005.1 1952224..1953585(+) (radA) [Lactococcus garvieae strain FDAARGOS_893]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVAVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLGEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGTGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAIAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFKKVYAPKNSLAGVDIPDNLKVIGVTTLSECLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=513032 I6G50_RS09865 WP_042753005.1 1952224..1953585(+) (radA) [Lactococcus garvieae strain FDAARGOS_893]
ATAGCTAAGAAAAAATCAACATTTCTCTGTCAAGAGTGTGGCTACAAATCTGTCAAAAAACTGGGACGGTGTCCCAACTG
TGGTGCTTGGGGTTCCTTTGTCGAAGAAGTTGCGGTGCAGGAAGTTAAAAATCAGAGAGTAAGTCTTACGGGTGAGCATT
CAAAACCGATGAAGCTTGATCAAGTTGAGCTTTTTGATACGCCTCGCGTGGAGACTGATTTGGGTGAATTTAATAGAGTA
TTGGGCGGAGGTGTTGTGCCCGGGAGCTTGGTACTCATCGGAGGAGATCCCGGAATCGGTAAATCCACGCTTTTACTCCA
AGTCTCAACGCAACTGGCTTCTCGAGGACGGGTCCTCTATGTAAGTGGTGAAGAGTCCGCTCAACAAATTAAGCTTCGCG
CAGAACGTTTGGGCGATATTGACACGGATTTCTATCTTTATGCGGAAACAAATATGCAAAGTATTCGCAATGAGGTTGAA
CGCTTGCAACCCGATTTTTTGATTGTTGACTCGATTCAAACAATCATGACACCTGAAATTCAAAGCACACAAGGTTCAGT
GAGCCAAGTCCGTGAAGTCACGGGAGAACTCATGCAGCTGGCTAAAACAAATGATATTGCAACCTTTATTGTTGGACATG
TGACAAAAGAAGGGCAGCTTGCAGGGCCTCGAATGTTAGAGCATATGGTAGATACTGTGTTGTATTTTGAGGGAGAACGA
CAAAATACTTTTCGGATTTTACGCGCTGTTAAAAATCGTTTTGGTTCGACGAATGAAATAGGGATTTTTGAAATGCAGGG
CACAGGTTTAGTCGAAGTAACCAATCCCAGTGAGGTCTTTTTAGAAGAACGGTTGGAAGGTTCCACAGGTTCAGCCATCG
TTTGTGCACTAGAAGGAACACGTCCGATTTTAGTTGAGATACAGGCCTTGACAACACCTACCATGTTTGGAAATGCTAAA
AGAACGACTTCTGGTTTGGACTTCAATCGCGTAAGTTTGATTATGGCGGTACTTGAAAAACGTGCAGGCTTTCTTTTACA
GCAACAAGATGCCTATTTAAAATCAGCAGGGGGTGTTAAACTGGATGAGCCTGCTATTGACTTAGCTGTAGCAATTGCGA
TTGCTTCAAGCTACAAAGAAGAGCCCACAGATGCGCGTGAGTGTTTTATTGGTGAAATTGGCCTTACTGGGGAGATACGT
CGTGTAACGCGTATGGAACAGCGTTTAAATGAAGCCAGTAAGTTAGGATTTAAAAAAGTTTATGCGCCTAAAAATAGTTT
GGCGGGTGTCGATATCCCAGATAATTTAAAAGTTATTGGTGTAACGACTCTGTCAGAATGTTTGAAAAAAGTATTTGGAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.132

100

0.801
  radA Streptococcus pneumoniae D39

80.132

100

0.801
  radA Streptococcus pneumoniae R6

80.132

100

0.801
  radA Streptococcus pneumoniae TIGR4

80.132

100

0.801
  radA Streptococcus mitis NCTC 12261

80.132

100

0.801
  radA Streptococcus mitis SK321

80.132

100

0.801
  radA Bacillus subtilis subsp. subtilis str. 168

62.092

100

0.629