Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   I6G50_RS08315 Genome accession   NZ_CP065691
Coordinates   1664118..1665161 (-) Length   347 a.a.
NCBI ID   WP_197908526.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659118..1670161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS08300 (I6G50_08295) rpsB 1659142..1659915 (-) 774 WP_003134921.1 30S ribosomal protein S2 -
  I6G50_RS08305 (I6G50_08300) - 1660188..1661228 (+) 1041 WP_003134922.1 lactonase family protein -
  I6G50_RS08310 (I6G50_08305) adhE 1661386..1664085 (+) 2700 WP_197908524.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  I6G50_RS08315 (I6G50_08310) sepM 1664118..1665161 (-) 1044 WP_197908526.1 SepM family pheromone-processing serine protease Regulator
  I6G50_RS08320 (I6G50_08315) coaD 1665151..1665648 (-) 498 WP_003134926.1 pantetheine-phosphate adenylyltransferase -
  I6G50_RS08325 (I6G50_08320) rsmD 1665638..1666177 (-) 540 WP_003134927.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6G50_RS08330 (I6G50_08325) - 1666270..1667616 (-) 1347 WP_081168444.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37940.47 Da        Isoelectric Point: 8.8989

>NTDB_id=513022 I6G50_RS08315 WP_197908526.1 1664118..1665161(-) (sepM) [Lactococcus garvieae strain FDAARGOS_893]
MKTEKIKNKRKFKLILSIGLPLILVVGLFFPLPYYIEQPGGAIPVNQMVNVAGKKDEHKGNFYLTTVEMVRGSAASILYS
KFDPFADVLSSKEMTGGLTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMEYQGVYVLNISEDSTFKNELQLSDTVTE
INGKTFKSSAEMIKYVSQQKVGDSVTIKYTRIDGSRHESIGKYIKLSNGKTSIGIGLVDHTQVVTDPKVKIDAGAIGGPS
AGMMFTLEIYGQLTGKDLRQGREVAGTGTINEDGSIGQIGGVDKKVTTASKEGAKIFLCPDETEEQSKASGTSNNYTDAL
AAAKKLKTDMKIVPVKTIQEALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=513022 I6G50_RS08315 WP_197908526.1 1664118..1665161(-) (sepM) [Lactococcus garvieae strain FDAARGOS_893]
ATGAAGACTGAAAAAATAAAAAATAAAAGAAAATTCAAGCTTATTTTATCGATAGGGCTACCGCTTATCCTTGTGGTAGG
CCTATTCTTTCCTTTGCCTTATTATATTGAGCAACCGGGTGGAGCGATACCCGTGAATCAAATGGTAAATGTAGCAGGAA
AAAAAGATGAGCATAAGGGAAATTTCTATCTGACTACAGTGGAAATGGTGCGAGGTTCTGCCGCAAGTATACTTTATTCT
AAGTTCGACCCTTTTGCGGATGTGCTAAGCAGTAAGGAAATGACTGGTGGTTTGACGAACCAGCAATTTGACCTAGTTAA
TCAGTTTTACATGCAAACGGCACAGAACACAGCAGTTTATCAAGCTTTTAAACTGGCTGGTAAACCTTATGAAATGGAAT
ATCAAGGTGTGTATGTTCTTAATATAAGTGAAGATTCGACTTTTAAAAATGAACTACAACTTTCCGATACGGTGACCGAA
ATTAATGGTAAAACATTTAAGTCTTCTGCAGAGATGATAAAGTATGTCTCTCAACAAAAAGTGGGTGACAGTGTAACTAT
CAAGTATACACGGATAGATGGAAGTCGCCATGAATCAATAGGGAAATATATTAAGTTAAGCAATGGTAAGACTAGTATTG
GTATTGGCCTAGTTGATCATACACAAGTCGTAACTGACCCGAAAGTGAAAATTGATGCTGGAGCTATTGGTGGACCTAGC
GCTGGCATGATGTTCACTCTAGAAATATATGGGCAACTTACAGGAAAGGACTTGCGTCAAGGACGAGAAGTAGCTGGAAC
TGGCACAATAAATGAAGATGGAAGTATAGGACAAATTGGAGGGGTAGACAAAAAAGTCACAACTGCCAGTAAAGAAGGTG
CTAAAATCTTTCTCTGCCCAGATGAAACAGAAGAGCAAAGCAAGGCCTCAGGAACCAGTAACAACTATACTGATGCCTTG
GCAGCAGCGAAAAAGTTAAAAACTGACATGAAAATCGTTCCTGTAAAAACGATTCAAGAAGCTCTGGATTATCTTGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(228-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.287

100

0.504