Detailed information NTG0513013

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I6G50_RS06775
• Genome accession: NZ_CP065691
• Coordinates: 1351130..1353382 (-)
• Length: 750 a.a.
• NCBI ID: WP_081164933.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain FDAARGOS_893
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1346130..1358382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G50_RS06745 (I6G50_06740)	-	1346185..1346655 (-)	471	WP_197908331.1	PTS sugar transporter subunit IIA	-
I6G50_RS06750 (I6G50_06745)	uvrB	1346885..1348873 (-)	1989	WP_004260139.1	excinuclease ABC subunit UvrB	-
I6G50_RS06755 (I6G50_06750)	-	1348870..1349325 (-)	456	WP_042753187.1	RNA pyrophosphohydrolase	-
I6G50_RS06760 (I6G50_06755)	def	1349432..1350058 (+)	627	WP_004260137.1	peptide deformylase	-
I6G50_RS06765 (I6G50_06760)	-	1350099..1350344 (-)	246	WP_004260136.1	hypothetical protein	-
I6G50_RS06770 (I6G50_06765)	-	1350347..1350949 (-)	603	WP_197908332.1	hypothetical protein	-
I6G50_RS06775 (I6G50_06770)	clpC	1351130..1353382 (-)	2253	WP_081164933.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I6G50_RS06780 (I6G50_06775)	rpoD	1353593..1354975 (-)	1383	WP_004260131.1	RNA polymerase sigma factor RpoD	-
I6G50_RS06785 (I6G50_06780)	dnaG	1355012..1356895 (-)	1884	WP_197908333.1	DNA primase	-

Sequence

Protein

• Length: 750 a.a.
• Molecular weight: 83704.72 Da
• Isoelectric Point: 4.7491

>NTDB_id=513013 I6G50_RS06775 WP_081164933.1 1351130..1353382(-) (clpC) [Lactococcus garvieae strain FDAARGOS_893]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRPMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQQIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAESQKNDAMQREDFEKAAHFRDQIAKLRELQNHEISDTE
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKNHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAHELFGSADSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEANVGFGAAREGRTNSVLGELDNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQISQNDIHLDVTQAAKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKKEEKQTKALEEPDEE

Nucleotide

• Length: 2253 bp

>NTDB_id=513013 I6G50_RS06775 WP_081164933.1 1351130..1353382(-) (clpC) [Lactococcus garvieae strain FDAARGOS_893]
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTACACCAATGTGAATGGTCAGCGCAAGCAAGTTGA
TTTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTATTTGCTGGGGCTACAAATATTTCTAATA
ATGATGATCCTTTCAATCCATTTCCTGATATTTTCCAAGCCTTACATGGCAATGATCAAGGACGTCCAATGACACCGCCA
ACTCAAGCAGGCGGTAGAGGTCCTGGTGGACCACAGAATCCTCGGGGAGGACAAGCTCCTAAAGGACTCTTAGAAGAATT
TGGCGTTAATATTACAGATGCAGCACGCCGTGGAGAAATTGATCCAGTTATTGGCCGGGATTCCGAAATTACCCGTGTTA
TTGAAATTTTGAACCGTCGTACAAAAAATAACCCTGTTCTTATCGGGGAACCTGGTGTTGGGAAAACCGCAGTAGTAGAG
GGACTAGCTCAGCAAATTGTTGACGGAGATGTTCCACAAAAACTGCAAAATAAAGAAGTTATTCGTCTTGATGTAGTTAG
CTTAGTTCAAGGTACAGGTGTGCGTGGGCAGTTTGAAGAACGTATGCAAAAGCTGATGGAAGAAATTCGTAAACGTGATG
ATGTAATTCTCTTCATTGATGAAATTCATGAAATCGTTGGAGCAGGTTCAGCGGGCGAAGGAAATATGGATGCCGGTAAT
ATTCTTAAACCAGCTTTGGCGCGTGGTGAACTTCAACTTGTCGGTGCAACTACACTAAATGAGTACAGAATTATTGAAAA
AGATGCAGCCTTAGAGCGTCGGATGCAGCCGGTTAAAGTAGATGAGCCTTCAGTTGATGAAACGATTACTATTTTGCGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTGAAGTATTCAGACGAAGCTATATTAGCTGCAGCCAATCTGTCTAAT
CGTTATATTCAAGACCGTTTCTTGCCAGATAAAGCGATTGACTTGCTTGACGAAGCAGGTTCTAAAAAGAACCTTACACT
TAAATTCGTTGATCCAGAAGATATAAAGAAACGAATTGAACAAGCAGAATCTCAAAAAAATGATGCGATGCAACGTGAAG
ACTTTGAGAAAGCAGCGCATTTCCGTGATCAGATTGCTAAATTACGGGAACTCCAAAATCATGAAATTTCAGATACTGAA
ATGCCCAATATCACTGAAAAAGATATTGAAGCGATTGTTGAAGAGAAAACGCATATTCCAGTGGGAGATCTGAAAGAAAA
AGAACAAACACAACTGATTAATCTAGCTGAAGATTTAAAGAATCATGTTATCGGGCAAGATGAAGCTATTGACAAAATTT
CTAAAGCTGTTCGTCGCTCCCGTGTTGGGCTTGGTAAACCAAATCGTCCAATTGGTTCTTTCCTCTTTGTTGGTCCTACT
GGTGTCGGTAAGACTGAGCTTGCAAAACAGCTTGCCCATGAACTCTTTGGTTCGGCGGACAGTATGATTCGTTTTGATAT
GTCGGAATATATGGAAAAACATAGTGTGGCCAAATTGATTGGTGCTCCTCCGGGCTATGTTGGCTATGAAGAAGCTGGTC
AATTGACTGAGCGCGTACGTCGCAACCCATATAGTTTGATTCTGCTGGATGAAATTGAAAAAGCTCACCCCGATGTTATG
CACATGTTCTTACAAATTCTTGATGATGGCCGTTTGACTGATGCGCAAGGCCGTACAGTTTCCTTTAAAGATGCCATTAT
CATTATGACTTCAAATGCAGGCACAGGTAAAGTAGAAGCAAATGTTGGATTTGGTGCAGCGCGTGAAGGGCGTACAAATT
CGGTCCTAGGGGAATTAGATAACTTCTTTAGCCCAGAGTTTATGAACCGCTTTGATGCGATCATCGAGTTCTCAGCTTTA
AGTAAAGAAAATCTTCTTAAGATTGTCGACCTTATGCTTGATGAAGTGAATGCTCAAATCAGTCAAAATGATATTCATTT
AGATGTTACCCAAGCAGCCAAGGAAAAACTTGTGGACCTTGGTTACGATCCGAAGATGGGAGCACGTCCACTTCGTCGTA
CTATTCAGGATAATATTGAAGATGCTATTGCTGATTTCTATATCGAACATCCAGAATATAAAGAGTTACTTGCAGACTTG
GTTGATGACAAAATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGAAAGAAGAGAAACAAACTAAGGCTTTAGAAGAACC
GGATGAAGAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (146-259)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• AAA lid domain (AAA_lid_9) (284-383)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.45	98.4	0.851
clpE	Streptococcus mutans UA159	77.23	100	0.773
clpE	Streptococcus pneumoniae D39	75.862	100	0.763
clpE	Streptococcus pneumoniae R6	75.862	100	0.763
clpE	Streptococcus pneumoniae Rx1	75.862	100	0.763
clpE	Streptococcus pneumoniae TIGR4	75.862	100	0.763
clpC	Bacillus subtilis subsp. subtilis str. 168	53.772	83.067	0.447
clpC	Streptococcus pneumoniae Rx1	46.741	83.867	0.392
clpC	Streptococcus pneumoniae TIGR4	46.741	83.867	0.392
clpC	Streptococcus pneumoniae D39	46.741	83.867	0.392
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.635	81.733	0.389
clpC	Streptococcus mutans UA159	46.602	82.4	0.384
clpC	Streptococcus thermophilus LMD-9	45.484	82.667	0.376
clpC	Streptococcus thermophilus LMG 18311	45.323	82.667	0.375