Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | I6G50_RS00370 | Genome accession | NZ_CP065691 |
| Coordinates | 35318..37768 (+) | Length | 816 a.a. |
| NCBI ID | WP_197909386.1 | Uniprot ID | - |
| Organism | Lactococcus garvieae strain FDAARGOS_893 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 30318..42768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G50_RS00345 (I6G50_00345) | - | 31219..31731 (+) | 513 | WP_003135164.1 | adenine phosphoribosyltransferase | - |
| I6G50_RS00350 (I6G50_00350) | rpoE | 31886..32443 (+) | 558 | WP_003135163.1 | DNA-directed RNA polymerase subunit delta | - |
| I6G50_RS00355 (I6G50_00355) | mltG | 32549..34252 (+) | 1704 | WP_197908837.1 | endolytic transglycosylase MltG | - |
| I6G50_RS00360 (I6G50_00360) | greA | 34278..34751 (+) | 474 | WP_197908838.1 | transcription elongation factor GreA | - |
| I6G50_RS00365 (I6G50_00365) | - | 34876..35328 (+) | 453 | WP_197908839.1 | CtsR family transcriptional regulator | - |
| I6G50_RS00370 (I6G50_00370) | clpC | 35318..37768 (+) | 2451 | WP_197909386.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| I6G50_RS00375 (I6G50_00375) | hpf | 37892..38449 (+) | 558 | WP_197908840.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| I6G50_RS00380 (I6G50_00380) | pflB | 38697..41030 (+) | 2334 | WP_197908841.1 | formate C-acetyltransferase | - |
| I6G50_RS00385 (I6G50_00385) | coaE | 41126..41731 (+) | 606 | WP_197908842.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 816 a.a. Molecular weight: 91057.07 Da Isoelectric Point: 5.6170
>NTDB_id=512995 I6G50_RS00370 WP_197909386.1 35318..37768(+) (clpC) [Lactococcus garvieae strain FDAARGOS_893]
MKFNEKDFTPQVIRVLEKSLDYAHKFNYAWVESSHLLAALAEVPASLAFTLLNSEQLDLEEMLIDIEDFSSQVKTKKSEI
KLSPRVENIIEQAKALAQNNDKNRVGTEHLLYMILANDAGFAGQLLREQNINIANLRKVLEQKAYLRVPERRKAVTPASK
RNLSGKVSETTTTPTLDTVSTDLTKAARDGKLDPMIGRDREVERLIHILSRRTKNNPVLVGEPGVGKSAIIEGFATRVAQ
GDVPVGLRGSRIMALNMAMVVAGTKFRGEFEDRLTAIVDEVTHDKDVIVFIDELHTIIGAGGGMDSVNDASNILKPALAR
GEFQLIGATTYQEYQKYIEKDEALERRFARVNVEEPSEDETVAILQGLKEKFEAYHTVKFDEGALERAVTLSNRYMPSRR
LPDKAIDLLDEAAAKVKITSKTNYSKLDELKAELKEQELKLQDAVVALDITAAQDIEKGIQKLTNKIDNFPLSEQDNPLV
QESDVYAVVSNLTGIPLQQMTKTESERLINLEKELHKRVVGQEEAISAVSRAIRRARSGIADSRRPLGSFMFLGPTGVGK
TELAKALAESVFGSEESMIRVDMSEYMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILFDEVEKAHPDIFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATAIRDDKTVGFGAKSISADYSAMKSRIMEELKKQYRPEFLNRIDETIVF
HSLTEKEIEQVVKIMSKSLISRLKDQNITLKFTSAALKVIADKGFDPEYGARPLRKALQREVEDLLSEQVLAEEIKPGDT
VSVGSSNKKIRISVID
MKFNEKDFTPQVIRVLEKSLDYAHKFNYAWVESSHLLAALAEVPASLAFTLLNSEQLDLEEMLIDIEDFSSQVKTKKSEI
KLSPRVENIIEQAKALAQNNDKNRVGTEHLLYMILANDAGFAGQLLREQNINIANLRKVLEQKAYLRVPERRKAVTPASK
RNLSGKVSETTTTPTLDTVSTDLTKAARDGKLDPMIGRDREVERLIHILSRRTKNNPVLVGEPGVGKSAIIEGFATRVAQ
GDVPVGLRGSRIMALNMAMVVAGTKFRGEFEDRLTAIVDEVTHDKDVIVFIDELHTIIGAGGGMDSVNDASNILKPALAR
GEFQLIGATTYQEYQKYIEKDEALERRFARVNVEEPSEDETVAILQGLKEKFEAYHTVKFDEGALERAVTLSNRYMPSRR
LPDKAIDLLDEAAAKVKITSKTNYSKLDELKAELKEQELKLQDAVVALDITAAQDIEKGIQKLTNKIDNFPLSEQDNPLV
QESDVYAVVSNLTGIPLQQMTKTESERLINLEKELHKRVVGQEEAISAVSRAIRRARSGIADSRRPLGSFMFLGPTGVGK
TELAKALAESVFGSEESMIRVDMSEYMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILFDEVEKAHPDIFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATAIRDDKTVGFGAKSISADYSAMKSRIMEELKKQYRPEFLNRIDETIVF
HSLTEKEIEQVVKIMSKSLISRLKDQNITLKFTSAALKVIADKGFDPEYGARPLRKALQREVEDLLSEQVLAEEIKPGDT
VSVGSSNKKIRISVID
Nucleotide
Download Length: 2451 bp
>NTDB_id=512995 I6G50_RS00370 WP_197909386.1 35318..37768(+) (clpC) [Lactococcus garvieae strain FDAARGOS_893]
ATGAAATTTAATGAAAAGGACTTTACACCACAAGTAATTCGTGTGCTTGAGAAGTCTTTAGACTATGCACATAAATTTAA
CTACGCTTGGGTTGAAAGTTCACACCTCTTGGCTGCTTTAGCTGAAGTCCCAGCTTCATTAGCATTCACTTTACTAAATT
CGGAGCAACTCGATTTAGAAGAAATGCTGATTGATATTGAGGACTTCTCAAGCCAAGTCAAAACAAAAAAATCCGAAATA
AAGCTCAGCCCAAGAGTTGAGAATATTATTGAACAAGCAAAAGCTTTGGCGCAAAATAATGACAAAAATCGTGTGGGTAC
AGAGCACCTTTTATATATGATTTTGGCTAACGACGCTGGTTTTGCAGGGCAACTTTTACGAGAGCAAAATATCAATATTG
CGAATCTTCGTAAGGTGCTGGAGCAAAAAGCTTACTTACGCGTGCCTGAACGCCGTAAAGCAGTGACTCCTGCATCAAAA
AGAAACTTATCAGGAAAAGTTTCGGAAACAACAACAACGCCAACTTTGGATACAGTATCTACAGATTTGACGAAAGCTGC
GCGTGATGGCAAACTTGACCCAATGATTGGTCGAGATCGTGAAGTTGAACGTTTGATTCATATACTTAGTCGCCGCACTA
AAAACAATCCCGTTTTAGTTGGTGAACCAGGAGTCGGAAAATCAGCCATCATCGAAGGTTTTGCGACCCGCGTTGCTCAG
GGGGATGTTCCTGTAGGCTTACGTGGAAGCCGTATCATGGCGTTGAACATGGCTATGGTTGTAGCTGGGACGAAATTCCG
TGGGGAGTTTGAAGATCGCTTAACAGCGATTGTCGATGAAGTTACGCACGATAAAGATGTGATTGTCTTTATTGATGAGT
TACACACCATTATTGGAGCTGGTGGGGGTATGGATTCTGTAAATGATGCCTCAAACATCTTGAAACCTGCATTAGCTCGG
GGTGAGTTCCAACTTATTGGTGCCACAACCTACCAAGAATATCAAAAATATATTGAAAAAGACGAAGCCTTAGAGCGCCG
CTTTGCACGTGTAAATGTAGAAGAACCATCAGAAGATGAGACAGTTGCAATTTTACAAGGTTTGAAGGAAAAATTTGAAG
CCTACCATACTGTTAAATTTGACGAAGGAGCCTTGGAACGTGCAGTAACCTTGAGCAATCGTTATATGCCAAGTCGCCGT
TTACCTGATAAAGCAATCGATCTTCTTGACGAAGCTGCTGCTAAAGTTAAGATTACCAGTAAGACAAATTATAGTAAATT
AGACGAGCTGAAAGCAGAACTCAAAGAGCAAGAGCTAAAACTGCAAGATGCGGTTGTAGCTCTTGACATCACTGCTGCGC
AGGATATTGAAAAAGGCATTCAAAAGTTAACAAATAAAATTGATAACTTTCCATTATCAGAACAAGATAATCCTTTGGTC
CAAGAAAGTGATGTCTATGCTGTAGTCTCAAATCTTACAGGTATTCCACTCCAACAAATGACTAAAACAGAAAGTGAACG
TCTAATTAACTTAGAAAAAGAATTACACAAGCGTGTAGTAGGTCAGGAAGAAGCCATCTCAGCTGTTTCTCGGGCGATTC
GACGTGCACGTTCAGGAATCGCTGACAGTAGACGACCACTGGGCTCCTTTATGTTCTTAGGCCCTACAGGTGTAGGTAAA
ACGGAACTAGCGAAGGCCTTAGCGGAAAGTGTGTTTGGGAGTGAAGAAAGTATGATTCGTGTAGACATGAGTGAGTACAT
GGAGAAATTCTCGACTTCACGTTTGATTGGTGCACCTCCTGGATATGTTGGTTATGATGAGGGTGGACAACTGACAGAAC
AAGTAAGAAACAAACCTTACTCCGTCATTCTCTTTGATGAAGTTGAAAAAGCTCATCCAGACATTTTCAATATTATGCTC
CAGATTTTAGATGATGGCTTTGTAACAGACACCAAAGGTCGTAAGGTTGATTTTCGCAATACAATTATCATCATGACTTC
CAACCTTGGCGCAACTGCCATTCGTGATGATAAAACGGTTGGCTTTGGTGCAAAATCCATCTCCGCCGACTATTCAGCGA
TGAAATCAAGAATTATGGAAGAGTTGAAAAAACAATACCGTCCAGAATTCCTGAACCGTATTGATGAAACCATCGTTTTC
CACTCGTTGACAGAAAAAGAAATTGAACAAGTTGTAAAAATCATGAGCAAATCGCTCATTTCTCGCTTGAAAGATCAAAA
CATCACCCTCAAATTTACTTCAGCCGCACTAAAAGTTATTGCTGACAAAGGTTTCGACCCGGAGTATGGTGCACGTCCAT
TACGTAAAGCTTTGCAACGTGAAGTTGAAGATTTGCTAAGTGAGCAAGTGCTTGCAGAAGAGATTAAGCCTGGTGATACG
GTATCTGTAGGTTCTTCTAATAAAAAGATTAGAATAAGTGTTATTGATTGA
ATGAAATTTAATGAAAAGGACTTTACACCACAAGTAATTCGTGTGCTTGAGAAGTCTTTAGACTATGCACATAAATTTAA
CTACGCTTGGGTTGAAAGTTCACACCTCTTGGCTGCTTTAGCTGAAGTCCCAGCTTCATTAGCATTCACTTTACTAAATT
CGGAGCAACTCGATTTAGAAGAAATGCTGATTGATATTGAGGACTTCTCAAGCCAAGTCAAAACAAAAAAATCCGAAATA
AAGCTCAGCCCAAGAGTTGAGAATATTATTGAACAAGCAAAAGCTTTGGCGCAAAATAATGACAAAAATCGTGTGGGTAC
AGAGCACCTTTTATATATGATTTTGGCTAACGACGCTGGTTTTGCAGGGCAACTTTTACGAGAGCAAAATATCAATATTG
CGAATCTTCGTAAGGTGCTGGAGCAAAAAGCTTACTTACGCGTGCCTGAACGCCGTAAAGCAGTGACTCCTGCATCAAAA
AGAAACTTATCAGGAAAAGTTTCGGAAACAACAACAACGCCAACTTTGGATACAGTATCTACAGATTTGACGAAAGCTGC
GCGTGATGGCAAACTTGACCCAATGATTGGTCGAGATCGTGAAGTTGAACGTTTGATTCATATACTTAGTCGCCGCACTA
AAAACAATCCCGTTTTAGTTGGTGAACCAGGAGTCGGAAAATCAGCCATCATCGAAGGTTTTGCGACCCGCGTTGCTCAG
GGGGATGTTCCTGTAGGCTTACGTGGAAGCCGTATCATGGCGTTGAACATGGCTATGGTTGTAGCTGGGACGAAATTCCG
TGGGGAGTTTGAAGATCGCTTAACAGCGATTGTCGATGAAGTTACGCACGATAAAGATGTGATTGTCTTTATTGATGAGT
TACACACCATTATTGGAGCTGGTGGGGGTATGGATTCTGTAAATGATGCCTCAAACATCTTGAAACCTGCATTAGCTCGG
GGTGAGTTCCAACTTATTGGTGCCACAACCTACCAAGAATATCAAAAATATATTGAAAAAGACGAAGCCTTAGAGCGCCG
CTTTGCACGTGTAAATGTAGAAGAACCATCAGAAGATGAGACAGTTGCAATTTTACAAGGTTTGAAGGAAAAATTTGAAG
CCTACCATACTGTTAAATTTGACGAAGGAGCCTTGGAACGTGCAGTAACCTTGAGCAATCGTTATATGCCAAGTCGCCGT
TTACCTGATAAAGCAATCGATCTTCTTGACGAAGCTGCTGCTAAAGTTAAGATTACCAGTAAGACAAATTATAGTAAATT
AGACGAGCTGAAAGCAGAACTCAAAGAGCAAGAGCTAAAACTGCAAGATGCGGTTGTAGCTCTTGACATCACTGCTGCGC
AGGATATTGAAAAAGGCATTCAAAAGTTAACAAATAAAATTGATAACTTTCCATTATCAGAACAAGATAATCCTTTGGTC
CAAGAAAGTGATGTCTATGCTGTAGTCTCAAATCTTACAGGTATTCCACTCCAACAAATGACTAAAACAGAAAGTGAACG
TCTAATTAACTTAGAAAAAGAATTACACAAGCGTGTAGTAGGTCAGGAAGAAGCCATCTCAGCTGTTTCTCGGGCGATTC
GACGTGCACGTTCAGGAATCGCTGACAGTAGACGACCACTGGGCTCCTTTATGTTCTTAGGCCCTACAGGTGTAGGTAAA
ACGGAACTAGCGAAGGCCTTAGCGGAAAGTGTGTTTGGGAGTGAAGAAAGTATGATTCGTGTAGACATGAGTGAGTACAT
GGAGAAATTCTCGACTTCACGTTTGATTGGTGCACCTCCTGGATATGTTGGTTATGATGAGGGTGGACAACTGACAGAAC
AAGTAAGAAACAAACCTTACTCCGTCATTCTCTTTGATGAAGTTGAAAAAGCTCATCCAGACATTTTCAATATTATGCTC
CAGATTTTAGATGATGGCTTTGTAACAGACACCAAAGGTCGTAAGGTTGATTTTCGCAATACAATTATCATCATGACTTC
CAACCTTGGCGCAACTGCCATTCGTGATGATAAAACGGTTGGCTTTGGTGCAAAATCCATCTCCGCCGACTATTCAGCGA
TGAAATCAAGAATTATGGAAGAGTTGAAAAAACAATACCGTCCAGAATTCCTGAACCGTATTGATGAAACCATCGTTTTC
CACTCGTTGACAGAAAAAGAAATTGAACAAGTTGTAAAAATCATGAGCAAATCGCTCATTTCTCGCTTGAAAGATCAAAA
CATCACCCTCAAATTTACTTCAGCCGCACTAAAAGTTATTGCTGACAAAGGTTTCGACCCGGAGTATGGTGCACGTCCAT
TACGTAAAGCTTTGCAACGTGAAGTTGAAGATTTGCTAAGTGAGCAAGTGCTTGCAGAAGAGATTAAGCCTGGTGATACG
GTATCTGTAGGTTCTTCTAATAAAAAGATTAGAATAAGTGTTATTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
70.798 |
99.877 |
0.707 |
| clpC | Streptococcus thermophilus LMG 18311 |
50.181 |
100 |
0.509 |
| clpC | Streptococcus thermophilus LMD-9 |
50.181 |
100 |
0.509 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.395 |
100 |
0.5 |
| clpC | Streptococcus pneumoniae Rx1 |
49.274 |
100 |
0.499 |
| clpC | Streptococcus pneumoniae D39 |
49.274 |
100 |
0.499 |
| clpC | Streptococcus mutans UA159 |
49.148 |
100 |
0.495 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.31 |
97.917 |
0.473 |
| clpE | Streptococcus mutans UA159 |
47.492 |
78.186 |
0.371 |
| clpE | Streptococcus pneumoniae Rx1 |
46.625 |
78.064 |
0.364 |
| clpE | Streptococcus pneumoniae D39 |
46.625 |
78.064 |
0.364 |
| clpE | Streptococcus pneumoniae R6 |
46.625 |
78.064 |
0.364 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.625 |
78.064 |
0.364 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
47.961 |
75.123 |
0.36 |