Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G57_RS15830 Genome accession   NZ_CP065683
Coordinates   3438987..3440366 (+) Length   459 a.a.
NCBI ID   WP_010104670.1    Uniprot ID   A0AAI8FMR9
Organism   Burkholderia oklahomensis strain FDAARGOS_900     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3433987..3445366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G57_RS15810 (I6G57_15810) - 3434148..3435122 (+) 975 WP_038802679.1 DUF1853 family protein -
  I6G57_RS15815 (I6G57_15815) thiD 3435501..3436310 (-) 810 WP_010104676.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  I6G57_RS15820 (I6G57_15820) lplT 3436387..3437694 (-) 1308 WP_038802678.1 lysophospholipid transporter LplT -
  I6G57_RS15825 (I6G57_15825) alr 3437906..3438976 (+) 1071 WP_010104672.1 alanine racemase -
  I6G57_RS15830 (I6G57_15830) radA 3438987..3440366 (+) 1380 WP_010104670.1 DNA repair protein RadA Machinery gene
  I6G57_RS15835 (I6G57_15835) - 3440531..3440797 (+) 267 WP_010104668.1 DUF2866 domain-containing protein -
  I6G57_RS15840 (I6G57_15840) - 3440855..3442792 (-) 1938 WP_010104666.1 ATP-binding cassette domain-containing protein -
  I6G57_RS15845 (I6G57_15845) - 3442939..3443418 (+) 480 WP_010104664.1 glutathione peroxidase -
  I6G57_RS15850 (I6G57_15850) - 3443729..3443983 (-) 255 WP_232238999.1 YciI family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48824.26 Da        Isoelectric Point: 7.1656

>NTDB_id=512946 I6G57_RS15830 WP_010104670.1 3438987..3440366(+) (radA) [Burkholderia oklahomensis strain FDAARGOS_900]
MAKQKTVFVCTECGGQTPKWQGQCPSCQAWNTLVESVESSPSAHRFKSLAKQAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQIASERPALYISGEESGAQIALRAQRLALLDGSGASAADLKLLAEIQLEKI
QATIDAERPDVAVIDSIQTIYSEVLTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLY
FEGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHTEVVPGSCVLVTQEGTRPLLVEVQALVDTAN
VPNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLIVFGEVGL
AGEIRPSPRGQERLREAAKLGFTTALIPKANAPKQPIDGLRVHAVERIEQAIDQIRVLE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=512946 I6G57_RS15830 WP_010104670.1 3438987..3440366(+) (radA) [Burkholderia oklahomensis strain FDAARGOS_900]
GTGGCGAAGCAAAAGACGGTATTCGTCTGCACCGAGTGCGGCGGGCAGACGCCGAAGTGGCAGGGGCAATGCCCGTCGTG
CCAGGCATGGAACACCCTCGTCGAGTCGGTCGAGAGCTCGCCGTCCGCGCACCGCTTCAAGTCGCTCGCGAAGCAGGCGC
CGGTGCAGCGGCTCGCGGACATCGAGGCGGCCGACGTGCCGCGCTTTTCGACTGGGATCGGCGAATTCGACCGGGTGCTG
GGCGGCGGGCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACGCTGCTGTTGCAGTC
GCTCGCGCAGATCGCGAGCGAGCGGCCGGCGCTCTATATCAGCGGCGAGGAATCGGGCGCGCAGATCGCACTGCGTGCGC
AGCGGCTCGCGCTCCTCGACGGCAGCGGCGCGAGCGCGGCCGATCTGAAGCTCCTTGCCGAAATCCAGCTCGAGAAGATC
CAGGCGACGATCGACGCCGAGCGGCCCGACGTCGCGGTCATCGACTCGATCCAGACGATTTATTCGGAAGTGCTGACGTC
GGCGCCCGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAATTGACGCGTATCGCGAAACAATCGGGCACCGCGATCA
TCATGGTCGGGCACGTGACGAAGGAGGGCAACCTTGCGGGCCCGCGCGTGCTCGAGCACATTGTCGATACCGTGCTGTAT
TTCGAAGGCGACACGCATTCGTCGTTTCGCCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGT
GTTCGCGATGACGGAGCGCGGCCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTTCTGTCGCAGCACACGGAGGTCGTGC
CGGGTTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGGCCGCTCCTCGTCGAGGTGCAGGCGCTCGTCGACACCGCGAAC
GTGCCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCACGC
GGGGATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTCGGCGGCGTCAAGATTACCGAGCCGGCCGCCGACCTCG
CGGTGCTGCTCGCGATTCATTCGTCGATGCGTAACAAACCGTTGCCAAAGGGTCTGATCGTATTCGGCGAAGTCGGGCTC
GCGGGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAACGCCTGCGCGAAGCGGCGAAGCTCGGCTTCACGACCGCGCTGAT
TCCGAAGGCGAATGCGCCGAAACAGCCGATCGACGGGCTTCGCGTGCATGCGGTCGAGCGGATCGAGCAGGCGATCGACC
AGATTCGCGTGCTCGAATGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-453)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.569

95.643

0.484
  radA Streptococcus mitis NCTC 12261

47.38

99.782

0.473
  radA Streptococcus pneumoniae D39

49.652

93.9

0.466
  radA Streptococcus pneumoniae TIGR4

49.652

93.9

0.466
  radA Streptococcus mitis SK321

49.652

93.9

0.466
  radA Streptococcus pneumoniae R6

49.652

93.9

0.466
  radA Streptococcus pneumoniae Rx1

49.652

93.9

0.466