Detailed information NTG0512945

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KUU68_RS07085
• Genome accession: NZ_CP078002
• Coordinates: 1501633..1502637 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain QZPH21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1496633..1507637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KUU68_RS07055 (KUU68_07055)	fghA	1496725..1497576 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KUU68_RS07060 (KUU68_07060)	ispF	1497647..1498120 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KUU68_RS07065 (KUU68_07065)	truD	1498117..1499184 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
KUU68_RS07070 (KUU68_07070)	surE	1499172..1499921 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KUU68_RS07075 (KUU68_07075)	-	1499954..1500589 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KUU68_RS07080 (KUU68_07080)	-	1500635..1501528 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
KUU68_RS07085 (KUU68_07085)	rpoS	1501633..1502637 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KUU68_RS07090 (KUU68_07090)	fdxA	1503063..1503386 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KUU68_RS07095 (KUU68_07095)	mutS	1503453..1506020 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KUU68_RS07100 (KUU68_07100)	-	1506146..1507153 (-)	1008	WP_191519407.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=512945 KUU68_RS07085 WP_003113871.1 1501633..1502637(+) (rpoS) [Pseudomonas aeruginosa strain QZPH21]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=512945 KUU68_RS07085 WP_003113871.1 1501633..1502637(+) (rpoS) [Pseudomonas aeruginosa strain QZPH21]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653