Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6G57_RS05865 Genome accession   NZ_CP065683
Coordinates   1300994..1302298 (+) Length   434 a.a.
NCBI ID   WP_010101570.1    Uniprot ID   A0AAI8B6N3
Organism   Burkholderia oklahomensis strain FDAARGOS_900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295994..1307298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G57_RS05835 (I6G57_05835) - 1296559..1297173 (+) 615 WP_025989644.1 50S ribosomal protein L25/general stress protein Ctc -
  I6G57_RS05840 (I6G57_05840) pth 1297285..1297890 (+) 606 WP_010101577.1 aminoacyl-tRNA hydrolase -
  I6G57_RS05845 (I6G57_05845) hisC 1297991..1299058 (+) 1068 WP_038800372.1 histidinol-phosphate transaminase -
  I6G57_RS05850 (I6G57_05850) - 1299182..1299484 (-) 303 Protein_1167 YfhL family 4Fe-4S dicluster ferredoxin -
  I6G57_RS05855 (I6G57_05855) coaD 1299507..1300007 (-) 501 WP_010101574.1 pantetheine-phosphate adenylyltransferase -
  I6G57_RS05860 (I6G57_05860) rsmD 1300118..1300744 (-) 627 WP_010101572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6G57_RS05865 (I6G57_05865) pilA 1300994..1302298 (+) 1305 WP_010101570.1 signal recognition particle-docking protein FtsY Machinery gene
  I6G57_RS05870 (I6G57_05870) maiA 1302409..1303053 (-) 645 WP_010101568.1 maleylacetoacetate isomerase -
  I6G57_RS05875 (I6G57_05875) nirB 1303454..1305898 (+) 2445 WP_010101564.1 nitrite reductase large subunit NirB -
  I6G57_RS05880 (I6G57_05880) nirD 1305964..1306359 (+) 396 WP_025989642.1 nitrite reductase small subunit NirD -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 45485.87 Da        Isoelectric Point: 5.3455

>NTDB_id=512940 I6G57_RS05865 WP_010101570.1 1300994..1302298(+) (pilA) [Burkholderia oklahomensis strain FDAARGOS_900]
MFSFFKRFKKAPEAAPAEPQQAPDTQPDDAGSPAAPETARADTPATPIARDEAPAAAPSSPVAQPSAAASAPATPPAASA
ATPEPRVQQRPSAEPARPSAEPAPSVVVTVTPSANGRNGVVETVEIVPPPAPEPAAKKSWLARLKSGLAKTSSSITNVFV
NTKIDEALYEELETALLMSDAGIDATEHLLDALREKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQPLVMMIA
GVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARNIDVMM
ADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNGLAQVKAFDDALGLTGLIVTKLDGTAKGGILAAI
ARQRPIPVYFIGVGEKVEDLQPFSAEEFADALLG

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=512940 I6G57_RS05865 WP_010101570.1 1300994..1302298(+) (pilA) [Burkholderia oklahomensis strain FDAARGOS_900]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAGCGCCCGAAGCCGCACCGGCCGAGCCGCAGCAAGCACCCGACACGCAGCC
GGACGATGCGGGCAGCCCCGCCGCGCCCGAGACCGCGCGGGCCGATACGCCTGCTACACCGATCGCGCGCGACGAAGCGC
CGGCCGCTGCGCCGTCAAGCCCCGTCGCGCAGCCGTCCGCCGCTGCGAGCGCGCCCGCGACGCCGCCCGCCGCGTCCGCC
GCAACGCCGGAACCGCGGGTTCAGCAGCGGCCGTCCGCAGAACCGGCGCGGCCGTCCGCCGAGCCCGCGCCGTCCGTCGT
GGTGACGGTCACGCCGTCTGCGAACGGCCGCAACGGGGTCGTCGAAACGGTCGAGATCGTGCCGCCGCCCGCCCCCGAGC
CGGCCGCCAAGAAATCGTGGCTCGCGCGGCTGAAATCCGGCCTCGCGAAGACGAGCTCGAGCATCACGAACGTGTTCGTC
AACACGAAGATCGACGAAGCGCTCTACGAGGAGCTCGAAACGGCGCTGCTGATGTCCGATGCCGGCATCGACGCGACCGA
GCATCTGCTCGACGCGCTGCGCGAAAAGGTGCGCACGGGCCGCCTCACCGATCCGCAGCAGGTGAAGGACGCGCTGCGCG
GCCTGCTCGTCGATCTGCTGAAGCCGCTCGAGAAGTCGCTCATGCTCGGGCGCGCGCAGCCGCTCGTGATGATGATCGCG
GGCGTGAACGGCGCGGGCAAAACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAAAGCTTCGATCAGTCGGTGCTGCT
CGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTCGTCC
AGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAACATCGACGTGATGATG
GCCGACACCGCGGGCCGCCTGCCGACGCAGCTGCATCTGATGGAGGAGCTTCGCAAGGTGAAGCGCGTGATCGGCAAGGC
GCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACAGGACAGAACGGACTCGCGCAGGTGAAGGCGT
TCGACGATGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATC
GCGCGGCAGCGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCAGCGCGGAGGA
ATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(235-434)

SRP54-type protein, helical bundle domain (SRP54_N)

(153-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.02

100

0.518