Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KUU68_RS02070 Genome accession   NZ_CP078002
Coordinates   449298..450626 (+) Length   442 a.a.
NCBI ID   WP_031757009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain QZPH21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444298..455626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU68_RS02050 (KUU68_02050) - 445135..445701 (-) 567 WP_003084491.1 hypothetical protein -
  KUU68_RS02055 (KUU68_02055) rsmD 445704..446300 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KUU68_RS02060 (KUU68_02060) - 446300..447787 (-) 1488 WP_003102862.1 M16 family metallopeptidase -
  KUU68_RS02065 (KUU68_02065) - 447780..449177 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  KUU68_RS02070 (KUU68_02070) pilA 449298..450626 (+) 1329 WP_031757009.1 signal recognition particle-docking protein FtsY Machinery gene
  KUU68_RS02075 (KUU68_02075) ftsE 450623..451294 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  KUU68_RS02080 (KUU68_02080) ftsX 451294..452301 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  KUU68_RS02085 (KUU68_02085) rpoH 452415..453269 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  KUU68_RS02090 (KUU68_02090) - 453334..453939 (+) 606 WP_003084511.1 hypothetical protein -
  KUU68_RS02095 (KUU68_02095) mtgA 453944..454675 (-) 732 WP_073658746.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KUU68_RS02100 (KUU68_02100) - 454712..455089 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  KUU68_RS02105 (KUU68_02105) thiS 455192..455392 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 46967.34 Da        Isoelectric Point: 4.7091

>NTDB_id=512929 KUU68_RS02070 WP_031757009.1 449298..450626(+) (pilA) [Pseudomonas aeruginosa strain QZPH21]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASLFL
GRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVIL
VVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGID
VLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVI
FALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=512929 KUU68_RS02070 WP_031757009.1 449298..450626(+) (pilA) [Pseudomonas aeruginosa strain QZPH21]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGC
CGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTC
GGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCAC
CACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGC
AGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTG
GTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGT
CATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGG
TGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGAC
GTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGAT
CGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGG
CCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATC
TTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGA
GGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(152-217)

SRP54-type protein, GTPase domain (SRP54)

(237-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.113

95.928

0.462