Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G157_RS05775 Genome accession   NC_022347
Coordinates   1162460..1163035 (+) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli CVM N29710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157460..1168035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G157_RS05755 (G157_05755) porA 1157856..1159142 (+) 1287 WP_021033747.1 group 3 major outer membrane porin protein PorA -
  G157_RS05760 (G157_05760) dnaJ 1159282..1160406 (-) 1125 WP_021033748.1 molecular chaperone DnaJ -
  G157_RS05765 (G157_05765) - 1160553..1161224 (+) 672 WP_002776259.1 response regulator transcription factor -
  G157_RS05770 - 1161221..1162470 (+) 1250 Protein_1129 ArsS family sensor histidine kinase -
  G157_RS05775 (G157_05780) recR 1162460..1163035 (+) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  G157_RS05780 (G157_05785) - 1163037..1163570 (-) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  G157_RS05785 (G157_05790) cybH 1163567..1164259 (-) 693 WP_002787327.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  G157_RS05790 (G157_05795) - 1164271..1165986 (-) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  G157_RS05795 (G157_05800) - 1165992..1167131 (-) 1140 WP_002776249.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=51291 G157_RS05775 WP_002776257.1 1162460..1163035(+) (recR) [Campylobacter coli CVM N29710]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=51291 G157_RS05775 WP_002776257.1 1162460..1163035(+) (recR) [Campylobacter coli CVM N29710]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment