Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   G157_RS05595 Genome accession   NC_022347
Coordinates   1120863..1121243 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli CVM N29710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115863..1126243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G157_RS05570 (G157_05560) aspS 1116376..1118127 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  G157_RS05575 (G157_05565) - 1118124..1118699 (+) 576 WP_002781658.1 adenylate kinase -
  G157_RS05580 (G157_05570) ppa 1118709..1119227 (+) 519 WP_002776378.1 inorganic diphosphatase -
  G157_RS05585 (G157_05575) msrA 1119275..1119775 (+) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G157_RS05590 (G157_05580) - 1119998..1120852 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G157_RS05595 (G157_05585) dprB 1120863..1121243 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  G157_RS05600 (G157_05590) dprA 1121240..1122010 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  G157_RS05605 (G157_05595) - 1122000..1123052 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  G157_RS05610 (G157_05600) ilvC 1123055..1124077 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  G157_RS05615 - 1124200..1126133 (+) 1934 Protein_1098 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=51288 G157_RS05595 WP_002776373.1 1120863..1121243(-) (dprB) [Campylobacter coli CVM N29710]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=51288 G157_RS05595 WP_002776373.1 1120863..1121243(-) (dprB) [Campylobacter coli CVM N29710]
ATGAGAGCTTTGGCTTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment