Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G66_RS21960 Genome accession   NZ_CP065668
Coordinates   4665240..4666625 (+) Length   461 a.a.
NCBI ID   WP_197954548.1    Uniprot ID   A0A7T2S130
Organism   Delftia acidovorans strain FDAARGOS_909     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4660240..4671625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G66_RS21935 (I6G66_21935) lplT 4661061..4662362 (-) 1302 WP_183021283.1 lysophospholipid transporter LplT -
  I6G66_RS21940 (I6G66_21940) alr 4662497..4663600 (+) 1104 WP_197954547.1 alanine racemase -
  I6G66_RS21945 (I6G66_21945) - 4663601..4664041 (-) 441 WP_183021285.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G66_RS21950 (I6G66_21950) - 4664139..4664951 (+) 813 WP_183021286.1 siderophore-interacting protein -
  I6G66_RS21960 (I6G66_21960) radA 4665240..4666625 (+) 1386 WP_197954548.1 DNA repair protein RadA Machinery gene
  I6G66_RS21965 (I6G66_21965) - 4666826..4667263 (+) 438 WP_183021288.1 glycerate kinase -
  I6G66_RS21970 (I6G66_21970) - 4667307..4668245 (+) 939 WP_034397818.1 branched-chain amino acid transaminase -
  I6G66_RS21975 (I6G66_21975) - 4668281..4668490 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  I6G66_RS21980 (I6G66_21980) - 4668522..4669394 (-) 873 WP_099735005.1 glycosyltransferase family 32 protein -
  I6G66_RS21985 (I6G66_21985) - 4669583..4670794 (+) 1212 WP_232245696.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48162.73 Da        Isoelectric Point: 7.1650

>NTDB_id=512822 I6G66_RS21960 WP_197954548.1 4665240..4666625(+) (radA) [Delftia acidovorans strain FDAARGOS_909]
MAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHHVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDLLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIAGLTVHAVERVDEAMNIVREIG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=512822 I6G66_RS21960 WP_197954548.1 4665240..4666625(+) (radA) [Delftia acidovorans strain FDAARGOS_909]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGAGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGGCCTG
CGGGGCCTGGAACTCGCTGATCGAGGCCGTTGCCGAGCCTGCGAGCGCGGGCAAGAACCGGCTCAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGTCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGATCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGACGCGCTGCACCACGTCGGCCTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGCGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACCCAGCCGGCCGTGGTCGTCATCGACTCCATACAGACCGTGTACTCGGACCT
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCACGTGACCAAGGAGGGTGCACTGGCCGGCCCGCGCGTGCTCGAGCACATGGTGGACACG
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTGACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCCGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCCATGCTGGTGGAGATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCGCGTCGCCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCACGCGGGTGTGGCCTGCGCGGACCAGGATGTGTTCGTCAACGCCGTGGGCGGTGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGTGGCCGCGCCCTGCCCAAGGGATTCCTCGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCGATTGCCGGTCTGACGGTCCATGCCGTCGAACGCGTGGACGAGGCCA
TGAACATCGTTCGAGAAATAGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T2S130

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

99.783

0.486
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus mitis SK321

48.09

96.529

0.464
  radA Streptococcus pneumoniae TIGR4

47.982

96.746

0.464
  radA Streptococcus pneumoniae R6

47.982

96.746

0.464
  radA Streptococcus pneumoniae Rx1

47.982

96.746

0.464
  radA Streptococcus pneumoniae D39

47.982

96.746

0.464