Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G157_RS03560 Genome accession   NC_022347
Coordinates   717604..718152 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli CVM N29710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 712604..723152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G157_RS03530 (G157_03550) ctsT 712646..712951 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  G157_RS03535 (G157_03555) proC 712948..713685 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  G157_RS03540 (G157_03560) fliW 713685..714074 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  G157_RS03545 (G157_03565) - 714238..714885 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  G157_RS03550 (G157_03570) lon 714901..717276 (+) 2376 WP_002783351.1 endopeptidase La -
  G157_RS03555 (G157_03575) rpsR 717333..717593 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  G157_RS03560 (G157_03580) ssb 717604..718152 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  G157_RS03565 (G157_03585) rpsF 718161..718538 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  G157_RS03570 - 718819..720090 (+) 1272 Protein_700 MFS transporter -
  G157_RS03575 (G157_03600) - 720090..721091 (+) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase family protein -
  G157_RS08985 - 721084..721725 (-) 642 Protein_702 DUF535 family protein -
  G157_RS03585 (G157_03615) rseP 721936..723039 (-) 1104 WP_021033695.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=51281 G157_RS03560 WP_002777084.1 717604..718152(-) (ssb) [Campylobacter coli CVM N29710]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=51281 G157_RS03560 WP_002777084.1 717604..718152(-) (ssb) [Campylobacter coli CVM N29710]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment