Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   I6G67_RS16120 Genome accession   NZ_CP065666
Coordinates   3250691..3251845 (+) Length   384 a.a.
NCBI ID   WP_004684451.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3245691..3256845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS16105 (I6G67_16105) - 3247409..3249454 (-) 2046 WP_004684454.1 TonB-dependent copper receptor -
  I6G67_RS16110 (I6G67_16110) - 3249527..3249946 (-) 420 WP_004684453.1 DUF2946 family protein -
  I6G67_RS16115 (I6G67_16115) def 3250037..3250570 (-) 534 WP_004684452.1 peptide deformylase -
  I6G67_RS16120 (I6G67_16120) tsaP 3250691..3251845 (+) 1155 WP_004684451.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6G67_RS16125 (I6G67_16125) dprA 3251868..3253001 (+) 1134 WP_004684449.1 DNA-processing protein DprA Machinery gene
  I6G67_RS16130 (I6G67_16130) - 3253047..3253616 (+) 570 WP_004684448.1 L-threonylcarbamoyladenylate synthase -
  I6G67_RS16135 (I6G67_16135) - 3254016..3254936 (-) 921 WP_004684446.1 DMT family transporter -
  I6G67_RS16140 (I6G67_16140) - 3255272..3255826 (+) 555 WP_004684444.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42254.21 Da        Isoelectric Point: 7.8309

>NTDB_id=512805 I6G67_RS16120 WP_004684451.1 3250691..3251845(+) (tsaP) [Acinetobacter johnsonii strain FDAARGOS_910]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=512805 I6G67_RS16120 WP_004684451.1 3250691..3251845(+) (tsaP) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCGTCATTTCAACAGCTCAAGCGGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCACATTGGATTTTCCCGGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTCTGGAAGGTACACCATATATCGTTGGTGCTGCCGATCAGCGTGTCATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGTAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGATCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTCGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661