Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6G67_RS15660 Genome accession   NZ_CP065666
Coordinates   3150011..3150334 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3145011..3155334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS15640 (I6G67_15640) - 3145052..3145798 (-) 747 WP_004692779.1 FHA domain-containing protein -
  I6G67_RS15645 (I6G67_15645) gspD 3145882..3148239 (-) 2358 WP_004692781.1 type II secretion system secretin GspD -
  I6G67_RS15650 (I6G67_15650) - 3148279..3149103 (-) 825 WP_004692782.1 type II secretion system protein N -
  I6G67_RS15655 (I6G67_15655) gspN 3149103..3149813 (-) 711 WP_017397056.1 type II secretion system protein N -
  I6G67_RS15660 (I6G67_15660) hns 3150011..3150334 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6G67_RS15665 (I6G67_15665) - 3150486..3150914 (-) 429 WP_004692787.1 thioesterase family protein -
  I6G67_RS15670 (I6G67_15670) - 3150922..3152115 (-) 1194 WP_004692788.1 hypothetical protein -
  I6G67_RS15675 (I6G67_15675) - 3152120..3152962 (-) 843 WP_004692789.1 hypothetical protein -
  I6G67_RS15680 (I6G67_15680) - 3152959..3153738 (-) 780 WP_004692790.1 uroporphyrinogen-III synthase -
  I6G67_RS15685 (I6G67_15685) hemC 3153751..3154671 (-) 921 WP_004692791.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=512801 I6G67_RS15660 WP_004692786.1 3150011..3150334(-) (hns) [Acinetobacter johnsonii strain FDAARGOS_910]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=512801 I6G67_RS15660 WP_004692786.1 3150011..3150334(-) (hns) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACTCAAATTAATGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86