Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6G67_RS01960 Genome accession   NZ_CP065666
Coordinates   371117..371974 (+) Length   285 a.a.
NCBI ID   WP_004691238.1    Uniprot ID   A0AAW6JCY5
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366117..376974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS01930 (I6G67_01930) wrbA 366130..366723 (+) 594 WP_004691248.1 NAD(P)H:quinone oxidoreductase -
  I6G67_RS01935 (I6G67_01935) - 366768..367142 (-) 375 WP_004691247.1 hypothetical protein -
  I6G67_RS01940 (I6G67_01940) - 367355..368347 (-) 993 WP_004691245.1 sensor domain-containing diguanylate cyclase -
  I6G67_RS01945 (I6G67_01945) - 368646..369221 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  I6G67_RS01950 (I6G67_01950) - 369312..370022 (-) 711 WP_004691241.1 DUF3108 domain-containing protein -
  I6G67_RS01955 (I6G67_01955) - 370179..370856 (-) 678 WP_004691240.1 hypothetical protein -
  I6G67_RS01960 (I6G67_01960) tonB2 371117..371974 (+) 858 WP_004691238.1 energy transducer TonB Machinery gene
  I6G67_RS01965 (I6G67_01965) - 372263..374410 (+) 2148 WP_004691236.1 TonB-dependent siderophore receptor -
  I6G67_RS01970 (I6G67_01970) - 374589..374999 (-) 411 WP_004691234.1 hypothetical protein -
  I6G67_RS01975 (I6G67_01975) ybeY 375102..375581 (-) 480 WP_004691232.1 rRNA maturation RNase YbeY -
  I6G67_RS01980 (I6G67_01980) - 375639..376715 (-) 1077 WP_004691231.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32599.13 Da        Isoelectric Point: 6.6632

>NTDB_id=512778 I6G67_RS01960 WP_004691238.1 371117..371974(+) (tonB2) [Acinetobacter johnsonii strain FDAARGOS_910]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=512778 I6G67_RS01960 WP_004691238.1 371117..371974(+) (tonB2) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGCCTTTGGCTCATGATTGGTGGAAAGATCCAATTTTTACAGCGACCGTCGTACTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCTATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCTGTCACTTTACGCCCTTCTGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGTACCTTTCGTGAGTCACATCGTATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAGCAGATCCAACAAAAACG
TGAACTGAATTTTGAAGAAAAACTGTTGATGACGACTTTAAGTTGGCAAAAACAAGCTGAGGATAATCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGTCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAGTTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGTGCTATTCGCCTGATTGATAGTTCAGGTCATGAGATGCTC
GATGAGGCGGCAAAAGCATCGGTACGTAAGGCCGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73