Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   I6G71_RS09405 Genome accession   NZ_CP065653
Coordinates   1848386..1851550 (-) Length   1054 a.a.
NCBI ID   WP_082308653.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_914     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1843386..1856550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G71_RS09405 (I6G71_09405) pilC 1848386..1851550 (-) 3165 WP_082308653.1 PilC family type IV pilus tip adhesin Machinery gene
  I6G71_RS09410 (I6G71_09410) - 1852110..1852394 (-) 285 WP_002246543.1 GIY-YIG nuclease family protein -
  I6G71_RS09415 (I6G71_09415) pilA 1852983..1854248 (-) 1266 WP_002228837.1 signal recognition particle-docking protein FtsY Machinery gene
  I6G71_RS09420 (I6G71_09420) msrAB 1854394..1855962 (+) 1569 WP_082308717.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  I6G71_RS09425 (I6G71_09425) - 1856064..1856549 (-) 486 WP_002221794.1 CinA family protein -

Sequence


Protein


Download         Length: 1054 a.a.        Molecular weight: 115697.56 Da        Isoelectric Point: 9.5812

>NTDB_id=512699 I6G71_RS09405 WP_082308653.1 1848386..1851550(-) (pilC) [Neisseria meningitidis strain FDAARGOS_914]
MNKTWKRQVFRHTALYTAILMFSHTGGGGAQAQTYPYALVMNGQKLPEVKWGQLYNSLPQKSNPRQVNFTTSFSGYKKNT
TFSFNNTDEVVAQKNGVTVFGAATYLPPYGKVSGFDEKRLKERGDVLGWIGTTRPGLVGYSYEGNTCSSGDCPDVSYKTQ
FTFGNQGLKSKVNGKLDIYEDKSRDNSPIYKLPDQPWLGVSFNLSSESVVESKKLKKVESSFSEDVTQSNGAQSLYKYKN
LVYTTGDVRNKGNQVHQDKHHAVAFYLNAKLHLLDKKNIQNIAQGITVNFGTLKTRIEPTDAWKNKRHLTHNVGNWEFKD
TGSVSVKLKLPEVKAGRCINKDNPNPKSKAPSPALTAPALWFGPVKDGKAEMYSASVSTYPDSSSSQIFLQNLSRKDDTS
KPGRYSLKPLSTSEIKSKEPSFTGRQTVIRLDGGVRHIQLDRNNEATGLNGNDGKNDTFGIIREGSFMPDASEWKKVLLP
WTVRGFADDSKFKAFNKEENNDNKPKYSQRYRIRENGNNGKRDLGDIVNSPIVAVGEYLATSANDGMVHIFKKNGGSDER
SYNLKLSYIPGTMPRQYFDNDTSALKDSTLAKELRAFAEKGYVGDRYGVDGGFVLREVELSGKKHVFMFGAMGFGGRGAY
ALDLTKAENGDPTAVSLFDVKHDNNGNNSNNSVQLGYTVGTPQIGKTHDGKYAAFLASGYATKTIDDQQNKTALYVYDLE
NNNGTPIAKIEVKDGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSDNPSSWTVRTIFQGTKPITSAPAISQLK
DKRVVIFGTGSDLSEEDVDSKEIQHVYGIFDNDTNTGVAKDGQGNGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLK
EGQRVTVKPTVVLRTAFVTIRKYNDGGCGAETAILGINTADGGKLTKKSARPIVPDTNTAVAQYSGHKQTTKGKSIPIGC
MEKDNGIACPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPDGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGP
TCGMKRISWREIFY

Nucleotide


Download         Length: 3165 bp        

>NTDB_id=512699 I6G71_RS09405 WP_082308653.1 1848386..1851550(-) (pilC) [Neisseria meningitidis strain FDAARGOS_914]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGCAAGCGCAAACGTATCCATACGCTCTTGTGATGAACGGACAAAAGCTGCCCGAGGTAAAGTGGGGGCAAT
TATATAATTCATTGCCGCAAAAAAGCAACCCCCGCCAAGTTAACTTTACGACATCTTTTAGTGGATACAAAAAAAACACT
ACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCGACCTACCTGCC
GCCCTACGGCAAGGTTTCCGGTTTTGATGAAAAGAGGCTGAAAGAGCGCGGCGATGTCCTTGGTTGGATTGGTACGACCC
GCCCGGGGTTGGTAGGCTACAGCTACGAAGGTAACACATGCTCCAGCGGAGACTGTCCTGATGTTAGCTATAAAACCCAA
TTTACCTTCGGTAATCAAGGGTTGAAAAGCAAGGTAAACGGCAAGCTGGATATATACGAAGACAAAAGCCGCGACAATTC
GCCCATTTATAAATTGCCGGATCAGCCTTGGTTGGGCGTGTCTTTCAATTTAAGCAGCGAGAGCGTCGTCGAATCAAAGA
AACTCAAGAAAGTGGAATCTTCTTTTAGCGAGGATGTGACGCAGAGCAATGGTGCGCAAAGCCTATACAAATACAAAAAC
CTCGTTTATACGACAGGCGATGTTCGTAATAAGGGTAATCAAGTTCATCAGGACAAACACCACGCTGTCGCCTTTTATCT
GAACGCCAAGCTGCACTTGCTGGATAAAAAAAACATCCAAAATATCGCGCAAGGCATAACAGTTAATTTTGGTACCTTGA
AAACACGCATCGAGCCGACGGACGCGTGGAAGAACAAGAGGCATCTCACTCATAATGTTGGTAATTGGGAGTTCAAAGAT
ACCGGATCAGTCAGCGTCAAACTCAAATTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACAAAGATAACCCCAATCCCAA
ATCCAAAGCCCCTTCGCCCGCACTGACTGCCCCCGCGCTGTGGTTCGGACCTGTGAAAGATGGCAAGGCGGAGATGTATT
CCGCTTCGGTTTCTACCTACCCCGACAGTTCGAGCAGCCAAATTTTCCTGCAAAACCTTTCCCGCAAGGATGACACAAGC
AAACCGGGCCGCTATTCCCTCAAACCCTTGAGTACGTCGGAGATTAAAAGTAAAGAGCCGAGTTTCACGGGGCGGCAAAC
TGTCATCCGATTGGATGGCGGCGTACGGCATATCCAACTGGATAGAAACAATGAGGCCACCGGTTTAAATGGAAATGACG
GCAAAAACGACACTTTCGGCATTATTAGAGAAGGGAGCTTCATGCCTGATGCCAGCGAGTGGAAAAAAGTATTGCTGCCT
TGGACGGTTCGGGGTTTTGCTGATGACAGTAAATTTAAAGCATTCAACAAAGAAGAAAACAACGACAACAAGCCAAAATA
CAGCCAAAGATACCGCATCCGCGAAAACGGCAACAACGGCAAGCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCG
CGGTCGGCGAGTATTTGGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCAAAAAAAACGGCGGCAGTGATGAACGC
AGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCAAAGA
CTCCACCCTCGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTG
TCTTGCGCGAAGTCGAACTGAGCGGGAAAAAACACGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCAGAGGTGCGTAT
GCCTTGGATTTGACCAAAGCCGAAAACGGTGACCCGACCGCCGTTTCCCTGTTTGATGTCAAACATGACAATAATGGCAA
TAATAGCAATAATAGCGTGCAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACGACGGCAAATACGCCG
CTTTCCTCGCCTCCGGTTATGCGACTAAAACCATTGACGACCAACAAAATAAAACCGCGCTGTATGTGTATGATTTGGAA
AACAACAACGGTACGCCGATTGCAAAAATCGAAGTGAAGGACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAA
AGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGATCGCGGCGGGAATATGTACCGCTTTGATTTGAGCAGCGACA
ATCCGTCCAGCTGGACTGTACGCACTATTTTCCAAGGCACGAAGCCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAA
GACAAACGCGTGGTCATCTTCGGCACGGGCAGTGATTTGAGTGAGGAGGATGTGGACAGCAAAGAAATCCAACACGTTTA
CGGTATTTTTGACAATGACACAAACACAGGTGTGGCGAAAGACGGGCAGGGCAACGGGCTGCTCGAGCAAGTGCTTAGTG
AGGAAAATAAAACCTTATTCCTGACCGATTATAAGCGATCCGACGGATCGGGCAGTAAGGGGTGGGTAGTGAAGCTGAAG
GAAGGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCGCAAATATAACGACGGCGG
CTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTG
TGCCGGACACCAATACGGCTGTCGCGCAATATTCCGGCCATAAGCAAACCACCAAAGGCAAATCCATCCCTATAGGTTGT
ATGGAAAAAGACAATGGAATCGCCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAA
GAAAACAGACGGATTTTCAACAACGGCAGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGACGGCAAGCGTGCCGGCA
AAAACAACCGCTGCTTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCG
ACGTGCGGTATGAAACGAATCAGCTGGCGTGAAATCTTCTACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

70.599

100

0.715