Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   I6G71_RS01410 Genome accession   NZ_CP065653
Coordinates   289278..289742 (+) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_914     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284278..294742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G71_RS01410 (I6G71_01410) comE 289278..289742 (+) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene
  I6G71_RS01415 (I6G71_01415) - 289856..290293 (-) 438 Protein_269 HK97 family phage prohead protease -
  I6G71_RS01420 (I6G71_01420) - 290405..290998 (-) 594 WP_002246348.1 hypothetical protein -
  I6G71_RS01425 (I6G71_01425) prmB 291143..292042 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  I6G71_RS11405 - 292055..292183 (+) 129 WP_002212671.1 hypothetical protein -
  I6G71_RS01430 (I6G71_01430) - 292323..293060 (+) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  I6G71_RS01435 (I6G71_01435) - 293186..293458 (+) 273 WP_002234162.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=512669 I6G71_RS01410 WP_010981251.1 289278..289742(+) (comE) [Neisseria meningitidis strain FDAARGOS_914]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=512669 I6G71_RS01410 WP_010981251.1 289278..289742(+) (comE) [Neisseria meningitidis strain FDAARGOS_914]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74