Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6G75_RS10940 Genome accession   NZ_CP065650
Coordinates   1970433..1971476 (-) Length   347 a.a.
NCBI ID   WP_001013200.1    Uniprot ID   A0AA96SWA8
Organism   Bacillus cereus strain FDAARGOS_918     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1965433..1976476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G75_RS10895 (I6G75_10895) - 1965860..1966060 (-) 201 WP_000106084.1 YqzE family protein -
  I6G75_RS10900 (I6G75_10900) aroK 1966099..1966596 (-) 498 WP_000836630.1 shikimate kinase AroK -
  I6G75_RS10905 (I6G75_10905) - 1966717..1967367 (-) 651 WP_000183879.1 2OG-Fe(II) oxygenase -
  I6G75_RS10910 (I6G75_10910) comGG 1967543..1967914 (-) 372 WP_001231191.1 competence type IV pilus minor pilin ComGG -
  I6G75_RS10915 (I6G75_10915) comGF 1967911..1968381 (-) 471 WP_000923088.1 competence type IV pilus minor pilin ComGF -
  I6G75_RS10920 (I6G75_10920) comGE 1968351..1968653 (-) 303 WP_000829458.1 competence type IV pilus minor pilin ComGE -
  I6G75_RS10925 (I6G75_10925) comGD 1968646..1969101 (-) 456 WP_000810393.1 comG operon protein ComGD -
  I6G75_RS10930 (I6G75_10930) comGC 1969098..1969397 (-) 300 WP_001178696.1 comG operon protein ComGC -
  I6G75_RS10935 (I6G75_10935) comGB 1969409..1970440 (-) 1032 WP_000471911.1 comG operon protein ComGB -
  I6G75_RS10940 (I6G75_10940) comGA 1970433..1971476 (-) 1044 WP_001013200.1 competence protein ComGA Machinery gene
  I6G75_RS10945 (I6G75_10945) - 1971682..1972377 (+) 696 WP_000434117.1 helix-turn-helix transcriptional regulator -
  I6G75_RS10950 (I6G75_10950) - 1972503..1972745 (+) 243 WP_000440711.1 DUF2626 domain-containing protein -
  I6G75_RS10955 (I6G75_10955) - 1972852..1974246 (+) 1395 WP_001094338.1 L-cystine transporter -
  I6G75_RS10960 (I6G75_10960) - 1974463..1974678 (-) 216 WP_001008320.1 DUF3912 family protein -
  I6G75_RS10965 (I6G75_10965) - 1974931..1975242 (+) 312 WP_001093243.1 hypothetical protein -
  I6G75_RS10970 (I6G75_10970) - 1975279..1975767 (-) 489 WP_000764279.1 hypothetical protein -
  I6G75_RS10975 (I6G75_10975) - 1975847..1976221 (-) 375 WP_001012350.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39412.97 Da        Isoelectric Point: 9.2147

>NTDB_id=512581 I6G75_RS10940 WP_001013200.1 1970433..1971476(-) (comGA) [Bacillus cereus strain FDAARGOS_918]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKYCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=512581 I6G75_RS10940 WP_001013200.1 1970433..1971476(-) (comGA) [Bacillus cereus strain FDAARGOS_918]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAGCTGCGTATAGGAAAAGATTTAATGACGAAATATTGTATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCTATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTGCGTCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
GTTATTCTCATGGATTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACATTGCAT
ACGAATGATGCGAGAGGGGCGATACTTCGGTTCATGGATTTTGGCATAACGAGGCAAGAAATCGAACAATCTTTATTAGC
TATAGCTGCACAGCGACTTGTCGAATTAAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGCAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACATACAAGCACGAAACATTACAATCTTCGATACGAAAAGGATACGCTTTAGGGTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366