Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6G80_RS17525 Genome accession   NZ_CP065647
Coordinates   3258176..3259078 (-) Length   300 a.a.
NCBI ID   WP_003181744.1    Uniprot ID   A0A1Y0YS93
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3253176..3264078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS17510 (I6G80_17500) xerC 3253535..3254449 (-) 915 WP_003181750.1 tyrosine recombinase XerC -
  I6G80_RS17515 (I6G80_17505) trmFO 3254516..3255820 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I6G80_RS17520 (I6G80_17510) topA 3255896..3257971 (-) 2076 WP_003181746.1 type I DNA topoisomerase -
  I6G80_RS17525 (I6G80_17515) dprA 3258176..3259078 (-) 903 WP_003181744.1 DNA-processing protein DprA Machinery gene
  I6G80_RS17530 (I6G80_17520) sucD 3259192..3260094 (-) 903 WP_003181741.1 succinate--CoA ligase subunit alpha -
  I6G80_RS17535 (I6G80_17525) sucC 3260113..3261273 (-) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  I6G80_RS17540 (I6G80_17530) - 3261450..3261731 (-) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  I6G80_RS17545 (I6G80_17535) - 3261728..3263416 (-) 1689 WP_101582750.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33196.51 Da        Isoelectric Point: 10.2533

>NTDB_id=512549 I6G80_RS17525 WP_003181744.1 3258176..3259078(-) (dprA) [Bacillus licheniformis strain FDAARGOS_923]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=512549 I6G80_RS17525 WP_003181744.1 3258176..3259078(-) (dprA) [Bacillus licheniformis strain FDAARGOS_923]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAAAATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397